Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04558 ATGGCTACTAATTATCAACCTTCAAACGCTTTCTCTTTTCTTTCTAAAGGTTGGAGAGATGTTCGTGACTCAGCTGACGCGGATCTACGTTTAATGAAAGACCGAGCCAACTCGTTCAAAAACCTAGCTACTTCGTTTGAAAGTGAAATTGAGAATTTCTTGAATTCGGCCGCTCCGGCTTTTTCTGTTCCGGCGATAAGTTCTCCGCCTCCGGCGGAGATTGAATTTGTGAAGAGACTTCAGCCGAAGTTATCGGAGATTCGGAGAGCTTATTCGTCTCCGGATTTTAGTAAGAAGGTTCTGGAAAAGTGGAGGCCGAGTGCGAAGATTCGGATTGATTTGTCAGCTATTAAGAACGCGATTGTTTCAGAGGAATTTGGTGATGGGATTGGGGATTTTGAGAGAGGGTTTAAGGGAAGGAGGTTAAGCTTTTGGGAAGGGTTCAAAGGTGAGATTGAAAGTGAGAGTGAAACTAGGGTTTGGGAACCAATTCGAGTTTTGAAAACTAGAATTAAAGAGTTTGAGAAGCGTAGTTCATTTGATGGATTCAAGAACAGTGAATTTCTTGAGAAACTTAAGTCAAGCTTGAAATCGATGTACAAGGAACCACAGGAGTCAAAGGAAGTGCCACCATTGGATGTACCTGAACTTCTGGCCTACTTTGTGAAACAGTCTGGACCATTTTTGGATCAACTTGGAGTCAGCAGAGATACATGCGACAAGATAGTTGAAAGCTTGTATAGCAAACGCAAGAACCAATTTCTACTGCAGTCTCTCTCTGGGGAAGAATCTTCTTTACTTGGGAATGGAAACATAAATGATGAATTGGATTTGCGAATAGCTAGTGTCCTTCAGAGCACAGGGCACCACTATGAAGGTGGACTCTGGACAGACCATGCTAAGCAGGATTTGTCTAACAATGAAAGACATGTTGCAATTGTTACAACCGCTAGTCTTCCTTGGATGACAGGAACAGCTGTAAACCCACTATTTCGAGCTGCATATTTATCACAATCTAAAAAGCAGAAAGTCACTCTGCTGGTTCCATGGCTTTGTGAATCGGATCAGGAACTAGTTTATCCCAGTAACGTCACTTTTACTTCGCCAGAAGAGCAGGAAGGTTATATTCGTAACTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCTGGGAAGTTTTCAAAGTCAAGACGTAGTATAATGCCTGTTGGAGATACTTCTCAATTTATACCATCTAAGGATGCTGACATTGCTATCCTGGAAGAACCAGAACATTTGAATTGGTATCATCATGGGAAACGTTGGACCGATAAATTCAACCATGTTGTTGGCATTGTTCACACAAATTACTTAGAATACATCAAAAGGGAGAAAAATGGAGCACTCCAGGCATTCTTTGTGAAACACATCAACAACTGGGTTACAAGAGCTTACTGTGATAAGGTTCTCCGTCTCTCGGCGGCTACTCAGGATGTACCCAAGTCTGTAATTTGCAATGTTCATGGTGTGAATCCCAAGTTCTTAAAAATTGGAGAAATGGTTGCTGCAGAGAGGGAACTAGGGCAGAAGGCTTTCACAAAAGGAGCATATTTCTTGGGAAAGATGGTATGGGCAAAGGGATATAAGGAGTTGATAGATTTATTAGGAAAGCATAAGGCAGACCTTGATGACTTCAACTTAGATGTATTTGGAAGTGGAGAGGATGCTCATGAAGTTCAGAGTGCAGCTAGAAGGTTGGATTTGAATCTCAACTTTCAGAAAGGAAGAGATCACGCAGATGATTCCCTTCACAGGTACAAAGTCTTCATAAATCCTAGTATCAGTGATGTGCTATGCACAGCTACCGCGGAGGCACTTGCAATGGGAAAATTTGTAGTTTGTGCTGATCATCCATCAAACGAGTTCTTCACATCATTTCCCAACTGTTTGATTTACAAGACACCTGAAGACTTTGTAGTAAAAGTAAAAGAAGCGTTAGCAAATGAACCTTATCCTCTCACACCTGAACAGAGATATAAACTTTCTTGGGAAGCGGCAACTCAAAGATTTATGGAATATTCCGAGCTTGACCAAATCCTGAACAAGGAAAATGATAGTGCAAAGTCAAGTAGAGATAAGGGAAGACTCATTGGCAAGTCAGCATCAATGCCTAATCTTTCAGAACTAGCAGATGGAGGCTTAGCTTTCGCTCACTACTGTCTCACTGGGAACGAGTTCCTGAGATTATGCACCGGAGCAACACCTGGGACACGTATTTTTGACAAGCAGCACTGTAAAGACCTTCATCTCTTGCCCCCACAGGTGGAAAATCCTATCTATGGCTGGTAA 2346 0.419 MATNYQPSNAFSFLSKGWRDVRDSADADLRLMKDRANSFKNLATSFESEIENFLNSAAPAFSVPAISSPPPAEIEFVKRLQPKLSEIRRAYSSPDFSKKVLEKWRPSAKIRIDLSAIKNAIVSEEFGDGIGDFERGFKGRRLSFWEGFKGEIESESETRVWEPIRVLKTRIKEFEKRSSFDGFKNSEFLEKLKSSLKSMYKEPQESKEVPPLDVPELLAYFVKQSGPFLDQLGVSRDTCDKIVESLYSKRKNQFLLQSLSGEESSLLGNGNINDELDLRIASVLQSTGHHYEGGLWTDHAKQDLSNNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSKKQKVTLLVPWLCESDQELVYPSNVTFTSPEEQEGYIRNWLEERIGFKADFKISFYPGKFSKSRRSIMPVGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDVPKSVICNVHGVNPKFLKIGEMVAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLGKHKADLDDFNLDVFGSGEDAHEVQSAARRLDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFTSFPNCLIYKTPEDFVVKVKEALANEPYPLTPEQRYKLSWEAATQRFMEYSELDQILNKENDSAKSSRDKGRLIGKSASMPNLSELADGGLAFAHYCLTGNEFLRLCTGATPGTRIFDKQHCKDLHLLPPQVENPIYGW 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04558 781 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 4 779 IPR044525 GO:0046481
Trre13g04558 781 CDD Glycosyltransferase_GTB-type 440 651 - -
Trre13g04558 781 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 311 691 - -
Trre13g04558 781 FunFam Digalactosyldiacylglycerol synthase 1, chloroplastic 509 667 - -
Trre13g04558 781 Gene3D Glycogen Phosphorylase B; 533 687 - -
Trre13g04558 781 FunFam Digalactosyldiacylglycerol synthase 1, chloroplastic-like 398 508 - -
Trre13g04558 781 Pfam Glycosyl transferases group 1 536 670 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04558 Trre-Chr13 53012068 53017603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04558 9 604 Glycosyltransferase AT3G11670 70.936 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04558 K09480 - gmx:100796354 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04558 13 53012068 53017603 Trre13g04558 13 53012068 53017603 ECH