Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04535 ATGGCCTATCCCTACATTCTCCTCTTTATCCTCTCTTTCCTCATCACATTCTCTTCTTCCACCCCAAACCCAAACACCATCACCCTTCCTCTTTCCCCTCTATCCCCCAAATCCCAATCCTCAGATCTCTTCAACTCTCTCAAAACAGCAGCTTCATCTACCTTATCAAGAGCTCATCACCTCAAAACCCAAAAACCAAATCACAAATCACCCAAATCCTCTTCCACCACAACCACCAACACACAAATTTTCTCAAAAAGCTATGGTGGTTACTCCATTAACCTCAATTTTGGAACACCATCACAAACCTTATCTTTTGTTTTAGACACAGGTAGCAGCCTTGTATGGTTCCCCTGTTCTTCTCACTACATCTGTTCCAATTGTAACTTCCCAAACATCAACCCAACAAAAATCCCATCTTTCATTTTCAAAAACTCATCTTCCTCAAAAATCCTAGGTTGTACAAACTCCAAATGCGGTTTAATTTTCGGACCCGACATTGAATCTCGTTGCAAAGGTTGTAATCCAAAAACAACAAACTGTAACAACATTACTTGTCCTGCTTATATAGTTCAATATGGTTTAGGTTCAACCATTGGTTTCTTACTATTGGAAAATCTAAATTTTCCCGGAAAAACTGTTCAAGATTTTCTCGTAGGTTGTTCTTTTTTATCAACCCGACAACCCTCCGGCATCGCAGGTTTCGGTCGTGGCAAAGATTCTCTTCCGTCGCAAATGGGTCTTAAAAGATTCTCTTACTGTTTACTTTCTCATCATTTCGACGACTCGCCGGAAAATAGTAACCTCGTTTTACAACTTTCCTCCACCGGAGATACAAAATCAAAAGGATTAAGCTACACTCCGTTTCGGAAAAACCCATCAACGAACAACACTGCATTTCTTGAATACTATTACGTGAATCTACGTAGTATTGTTATCGGAGGAAAACGTGTTAAGATTCCGTTAACTGTTTCAGAACCGGGAATTGACGGTAACGGTGGAACTATCGTTGATTCTGGATCAACGTTTACTTTTATGGAAAAAGAAATCTTTGATTTGGTTTCGAAAGAGTTTGAAAATCAGCTTAAGAATTTCACTAGAGCGAAAGAAGTTGAAGGTGTATCGGGGTTGAATCTCTGTTTTGATTTCACCGGAGTAAAAACGGTGCCGTTTCCGGAGGTAGTGTTTCAGTTTAAAGGGGGTGCAAAAATGAAGTTACCGGTTGAGAATTATTTTTCTTTAGTTGGTGAAGGGGATGTTGCTTGTTTAACTGTTGTTACTGATGGAGTTGCAGCGCCGGAGAGAAGTGGTGGTCCGGCGATAATTTTGGGGAATTATCAGCAACAGAATTTTAATGTTGAGTATGATTTGGAAAATGATAGGTTTGGATTTGGACCTCAGAGTTGTCAAAAAAGTGCTTAA 1422 0.398 MAYPYILLFILSFLITFSSSTPNPNTITLPLSPLSPKSQSSDLFNSLKTAASSTLSRAHHLKTQKPNHKSPKSSSTTTTNTQIFSKSYGGYSINLNFGTPSQTLSFVLDTGSSLVWFPCSSHYICSNCNFPNINPTKIPSFIFKNSSSSKILGCTNSKCGLIFGPDIESRCKGCNPKTTNCNNITCPAYIVQYGLGSTIGFLLLENLNFPGKTVQDFLVGCSFLSTRQPSGIAGFGRGKDSLPSQMGLKRFSYCLLSHHFDDSPENSNLVLQLSSTGDTKSKGLSYTPFRKNPSTNNTAFLEYYYVNLRSIVIGGKRVKIPLTVSEPGIDGNGGTIVDSGSTFTFMEKEIFDLVSKEFENQLKNFTRAKEVEGVSGLNLCFDFTGVKTVPFPEVVFQFKGGAKMKLPVENYFSLVGEGDVACLTVVTDGVAAPERSGGPAIILGNYQQQNFNVEYDLENDRFGFGPQSCQKSA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04535 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 106 117 IPR001969 GO:0004190|GO:0006508
Trre13g04535 473 ProSiteProfiles Peptidase family A1 domain profile. 91 465 IPR033121 -
Trre13g04535 473 MobiDBLite consensus disorder prediction 55 80 - -
Trre13g04535 473 FunFam Aspartyl protease family protein 275 472 - -
Trre13g04535 473 FunFam Aspartic proteinase nepenthesin-2 58 269 - -
Trre13g04535 473 SUPERFAMILY Acid proteases 87 469 IPR021109 -
Trre13g04535 473 Gene3D Acid Proteases 272 473 IPR021109 -
Trre13g04535 473 PANTHER OS07G0603500 PROTEIN-RELATED 32 470 - -
Trre13g04535 473 CDD pepsin_A_like_plant 90 469 IPR034161 -
Trre13g04535 473 Gene3D Acid Proteases 72 271 IPR021109 -
Trre13g04535 473 Pfam Xylanase inhibitor N-terminal 91 270 IPR032861 -
Trre13g04535 473 Pfam Xylanase inhibitor C-terminal 304 465 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04535 Trre-Chr13 52844047 52845468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04535 69 471 Miscellaneous Gene Families AT1G44130 25.522 4.48e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04535 - - psat:127125583 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04535 13 52844047 52845468 Trre13g04535 13 52844047 52845468 ECH