Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04521 ATGGGTAACGCTCAGTCTCCTCCTAATGATCCTCGATATCTTTCAGCATCCAGAGCTTTTAGTCAAAAGGAACTTCAAGACTTAAAGTCTCTGTTCAATTCTTTAGCATCTCAATCACAGAGCAATGGCAAATACATTTCTCCTTCAATTTTTCAGTCATATTTCAAACTTCATGGTCCTGTTGGAGAGAGGATGTTTGATTTAGTTACTCAGGAACGCAAGGATCAAAAGTTAACCTTTGAAGACCTTGTTATTACTAAAGCTACTTATGAGAAAGGAACTAAAGATGAAATCGAAGAATTCATTTTTCGCTTATTAGATGTATCCGGAGATAATTTTGTAGGGAGGTCTGATTTGGAATCGGTTATGATTGCCATTTTTAACGATATATTATGCATAAAAGGTTCTGAAGATGGAACAAGTTCACATCAAGATATTGTTAACATATTTCTGTATGCTGCAACTTTCTCCATACATGATGAAAAGTGCACCGAGGAAGCTATGTCGTTTGAAGATTTCAGAAGTTGGTGTACTCATCTCCCGACTGTGAGGAAGCTTCTTGGAAGCTTGCTTTTGCCTCCAGATTCAGGACGGCCAGGTACTCAAATTCCTAATCTACTAACCCCGAAGGATATTGATTCTAACATTGTACTTTTGAGAAAGGAGTATGCTTGGCATATAGGAGGAGCACTTTCTCAGCATGAGCTGGAAGATTGGAAGCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTCAATACTTTCTTGGGCAACATTTCAAATCATGAAGGCCCAACTGTGCTAATTATTAAGGATAAAGATGGTTATATATATGGAGGGTATGCTTCTCAACAATGGGAGCGGCATGCTGAATTTTACGGAGACATGAAAAGTTACATTTTTCAACTTAATCCAAAGGCATCAATATTCAGGCCTACTGGAGCAAACACCAATCTTCAATGGTGTGCTGTTAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGAAAAGAAAGTCACTTTGGGTTATTTATCTCAGCAAACTTTGATCAAGGACATACATTTTCATGTTCAACATTTGGTAGCCCTTGCCTCTCCAAAACTAACCGTATAATACCTGAAGTAATAGAATGTTGGGGAGTGACACAAGGTTTGGTACAAGGCAAGAATGATGCTGTTAAAGGGACTGTACTTGAAAGGTTTAAGGAAGATAGGCATATGCTCAATATGGTAGGGCTAGCCAATTCTAGCGAGTAA 1266 0.3839 MGNAQSPPNDPRYLSASRAFSQKELQDLKSLFNSLASQSQSNGKYISPSIFQSYFKLHGPVGERMFDLVTQERKDQKLTFEDLVITKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLESVMIAIFNDILCIKGSEDGTSSHQDIVNIFLYAATFSIHDEKCTEEAMSFEDFRSWCTHLPTVRKLLGSLLLPPDSGRPGTQIPNLLTPKDIDSNIVLLRKEYAWHIGGALSQHELEDWKLLYHSSVNGLSFNTFLGNISNHEGPTVLIIKDKDGYIYGGYASQQWERHAEFYGDMKSYIFQLNPKASIFRPTGANTNLQWCAVNFSSEDIPNGIGFGGKESHFGLFISANFDQGHTFSCSTFGSPCLSKTNRIIPEVIECWGVTQGLVQGKNDAVKGTVLERFKEDRHMLNMVGLANSSE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04521 421 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 21 384 - -
Trre13g04521 421 SUPERFAMILY EF-hand 3 190 IPR011992 -
Trre13g04521 421 SMART 109ultra 216 385 IPR006571 -
Trre13g04521 421 ProSiteProfiles TLDc domain profile. 217 385 IPR006571 -
Trre13g04521 421 Gene3D - 1 189 - -
Trre13g04521 421 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Trre13g04521 421 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Trre13g04521 421 Pfam TLD 241 384 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04521 Trre-Chr13 52719337 52723093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04521 102 420 EF-hand Containing Proteins AT5G06260 61.491 6.83e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04521 - - gmx:100804508 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04521 13 52719337 52723093 Trre13g04521 13 52719337 52723093 ECH