Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04518 ATGGCAAGTTCAACCCCCGCAGTCAGCAGAAGACTGGAAGGAAAAGTGGCGTTGATAACCGGAGGAGCTAGTGGAATCGGCAAACGCACTGCAGAGATATTTGCAGAACAAGGAGCCAAAGTAGTGATCGCAGACATCCAAGATGAACTTGGACACTCAGTTGCTCAATCCATAGGATCGTCAACATGTTTATACGTACACTGCGATGTCACTGATGAGAACCAAATCAAAAATGCTGTGGACACAACCGTACAAACATACGGAAAACTCGACATCATGTTCAACAATGCTGGCATAGGTGGCCCTAACAACGCTCGAATCATCGACAACGATAAAGCAGATTTCGAACGCGTACTAAGCATCAATCTCACAGGTGTTTTCCTCGGCATCAAACACGCAGCACAAGCCATGATCCCAGCTCGTACCGGTAGCATTATAAGTACTTCTAGCATAAGCTCTTATGTTGGCGGTGCTGCCTCACATGCTTATTGTTGTGCAAAGCATGCTGTGGTTGGTTTAACTAAAAATGCAGCAGTTGAACTTGGACAATTTGGGATTAGAGTTAATTGTTTGTCTCCTTACGCTTGCGCAACTCCTCTGGCAACACAATTTGTTGGATTGAATGATGATATGCTAGAAAGTACCATGAACTTGTTGGCTAATCTTAAGGGTGTGACATTTAAAACCGATGATGTGGCAAATGCAGCACTTTATTTCGCTAGCGATGATTCGAGGTATGTGAGTGGCCATAATTTGCTCATAGATGGAGGGTTTAGCATTGTTAATCCATCCTTTCACATGTTTCAGTATTCAGAGTCTTGA 822 0.438 MASSTPAVSRRLEGKVALITGGASGIGKRTAEIFAEQGAKVVIADIQDELGHSVAQSIGSSTCLYVHCDVTDENQIKNAVDTTVQTYGKLDIMFNNAGIGGPNNARIIDNDKADFERVLSINLTGVFLGIKHAAQAMIPARTGSIISTSSISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYACATPLATQFVGLNDDMLESTMNLLANLKGVTFKTDDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFHMFQYSES 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04518 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 261 IPR036291 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Trre13g04518 273 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Trre13g04518 273 Pfam Enoyl-(Acyl carrier protein) reductase 21 259 - -
Trre13g04518 273 Gene3D - 3 270 - -
Trre13g04518 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 262 - -
Trre13g04518 273 FunFam Short-chain dehydrogenase reductase 1 263 - -
Trre13g04518 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Trre13g04518 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Trre13g04518 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Trre13g04518 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04518 Trre-Chr13 52703861 52705080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04518 12 268 Acyl Lipid Metabolism Gene Families AT1G63380 30.451 1.97e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04518 - - gmx:100802915 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04518 13 52703861 52705080 Trre13g04518 13 52703861 52705080 ECH