Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04494 ATGTTTCTTTCAAAGGGTGTCACCATCTTTGTAGCTGTTATTTCCATTAGTTTGTTGCTAATAAACAATGGTGTTGAAGCATTTCATAAAATATATCCTCATCTTCAATCTGTTTCAACTCTTTCCGTGAAGGAATTGCATAGAACTGGATACCATTTTCAACCTCCTAGGAACTGGATCAACGGACCTATGTACTACAATGGATACTATCACCTATTCTACCAATACAACCCAAAAGGATCTGTTTGGGGAAACATTGTATGGGCTCATTCAATATCAAAGGATCTTATAAACTGGAAAGCACTTGAACCTGCAATTTATCCATCTAAACCCTTTGACAAATATGGATGTTGGTCCGGGTCGGCCACCATAATTCCGGGTAAGGGACCCATTATCCTTTACACGGGAGTTATTGACGAAAATATGACTCAAGTCCAATGTTATGCTATACCCGAAGATATAAACGATCCATTTCTTAGAAAATGGGTTAAACCCGACCGGGGCAACCCAATTTTGATTGCGGATAAAGGAGTAAATGGGAGCGCGTTTCGTGACCCTACAACTGCTTGGAAAGGTAAAAGTGGACATTGGAAAATGTTGGTTGGGAGTAGAAGAAAACATAGAGGAATGGCCTATTTATATAGGAGTAGGGATTTTATGAAATGGGTTCGGGCCAAACACCCGATCCACTCGGCTCAAACGGGTATGTGGGAGTGTCCTGATTTTTACCCGGTTTTATTGAGAGGGAAAGAAGGGTTGGATACATCAATTGAAGGTAATCATGTTAAACATGTCTTAAAAAATAGTCTTGACATTACTAGATTTGAGTACTATACATTAGGTACATATTTTAGTGATAAGGACAAGTATGTTCCAAATAATACTTCAGAAGATGGTTGGGGTGGCCTTAGATATGACTATGGTAACTTTTATGCTTCAAAGTCATTTTTTGATCAAAGTAAGAATCGTAGGATCATTTGGGGTTGGGCTAATGAGTCTGACTCCAGAACTGATGATGTTAAAAAAGGATGGGCTGGAATTCAGGCAATACCAAGAGTTGTGTGGCTTGATTCTACAGAAAGGCAATTGGTACAATGGCCTGTTGAAGAATTGAATCAACTCAGAGATAAGGAAGTTAGTATGAACAATAAAAAGCTTGAAAAGGGTGATTTTGTAGAAGTAGCTGGATTAATAACTGCTGCCCAAGCAGATGTTGAAGTTAATTTCTCATTTTCAAGCTTGGAAAAAGCAGAGAATTATGATCCAAATTGGGTAAACGCACAAGATCTTTGTTTCCAAAAAGGTTCAAAAGTTCAAGGTGGGCTTGGGCCTTTTGGGCTTTTGACTTTGGCTTCAGAAAATTTGGCAGAGTTCACTCCTGTATTCTTTAGAGTCTTCAAAGCTCCAAATAAGCATGTAGTTCTCTTGTGCTCTGATGCTAGCAGTTCTTCTTTGAAGAGTGAAATGCACAAGCCATCATTTGGTGGATTTGTAGATGTAGATTTAGCTACAAACAAACTTTCACTTAGGAGTTTGATTGACCACTCAGTAGTTGAAAGCTTTGGAGAAGGAGGGAAAACAAACATTTTATCTAGGGTTTATCCGGTACTAGCTGTGACACATCAAGCTCATTTGTATGTGTTTAACAATGGTACTGAACCAATCACTGTGGAGAATCTTAAAGCATGGAATATGAAATCTGCTAATTTAAAAGGTAGTTAG 1722 0.3844 MFLSKGVTIFVAVISISLLLINNGVEAFHKIYPHLQSVSTLSVKELHRTGYHFQPPRNWINGPMYYNGYYHLFYQYNPKGSVWGNIVWAHSISKDLINWKALEPAIYPSKPFDKYGCWSGSATIIPGKGPIILYTGVIDENMTQVQCYAIPEDINDPFLRKWVKPDRGNPILIADKGVNGSAFRDPTTAWKGKSGHWKMLVGSRRKHRGMAYLYRSRDFMKWVRAKHPIHSAQTGMWECPDFYPVLLRGKEGLDTSIEGNHVKHVLKNSLDITRFEYYTLGTYFSDKDKYVPNNTSEDGWGGLRYDYGNFYASKSFFDQSKNRRIIWGWANESDSRTDDVKKGWAGIQAIPRVVWLDSTERQLVQWPVEELNQLRDKEVSMNNKKLEKGDFVEVAGLITAAQADVEVNFSFSSLEKAENYDPNWVNAQDLCFQKGSKVQGGLGPFGLLTLASENLAEFTPVFFRVFKAPNKHVVLLCSDASSSSLKSEMHKPSFGGFVDVDLATNKLSLRSLIDHSVVESFGEGGKTNILSRVYPVLAVTHQAHLYVFNNGTEPITVENLKAWNMKSANLKGS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04494 573 CDD GH32_Fruct1-like 58 356 - -
Trre13g04494 573 Gene3D Glycosyl hydrolase domain; family 43 57 380 IPR023296 -
Trre13g04494 573 Pfam Glycosyl hydrolases family 32 N-terminal domain 52 367 IPR013148 -
Trre13g04494 573 SMART glyco_32 52 525 IPR001362 GO:0004553|GO:0005975
Trre13g04494 573 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 379 565 - -
Trre13g04494 573 Gene3D - 381 565 - -
Trre13g04494 573 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 38 569 - -
Trre13g04494 573 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 56 379 - -
Trre13g04494 573 SUPERFAMILY Concanavalin A-like lectins/glucanases 367 568 IPR013320 -
Trre13g04494 573 Pfam Glycosyl hydrolases family 32 C terminal 370 564 IPR013189 -
Trre13g04494 573 SUPERFAMILY Arabinanase/levansucrase/invertase 43 368 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04494 Trre-Chr13 52463626 52469422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04494 24 565 Glycoside Hydrolase AT2G36190 64.337 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04494 K01193 - gmx:100799008 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04494 13 52463626 52469422 Trre13g04494 13 52463626 52469422 ECH