Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04486 ATGAGCAGGTCAGGGCAACCACCAGATTTGAAGAAGTACATGGACAAACAACTTCAAATCAAGCTGAATGCCAATTGTATGATTATCGGTACTCTCCGTGGCTTCGACCAGTTTATGAATTTGGTTGTTGACAATACTGCGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTTGTGATCAGAGGAAACAGTGTGGTCACAGTAGAGGCACTTGAACCAGTGAACAGAACATCCTGA 243 0.4362 MSRSGQPPDLKKYMDKQLQIKLNANCMIIGTLRGFDQFMNLVVDNTAEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRTS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04486 80 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Trre13g04486 80 Pfam LSM domain 9 71 IPR001163 -
Trre13g04486 80 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 3 78 IPR044641 -
Trre13g04486 80 Gene3D - 1 76 - -
Trre13g04486 80 FunFam Small nuclear ribonucleoprotein G 1 76 - -
Trre13g04486 80 SMART Sm3 8 72 IPR001163 -
Trre13g04486 80 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
Trre13g04486 80 ProSiteProfiles Sm domain profile. 5 76 IPR047575 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04486 Trre-Chr13 52414929 52416553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04486 K11099 - gmx:100305530 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04486 13 52414929 52416553 Trre13g04486 13 52414929 52416553 ECH