Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04485 ATGACGGAAGTGCTTCAATTTCCTTCACCTTCAAGCTGTTCACTTAATCCCAATGATTCCTCTCACCAAACAACAACTTCTCTTATCACTATTAACAATCATGATCATTCCCATTTTCAGATTCAACATCAAGAAGAAGAACAAGAACAAGAAGAAAAGGATCAGCTTTCTATTTTGACACTTTTGATTGCTACTTTTAGGAAATCTTTGATTGGTTGTAGCAGTACTGGTGCTAGTGGTGGTGAAATTTCATCTTCATCTTCTTCTTCTTCAATGGAAATTGGTTGGCCTTCTAATGTTAGACATGTTGCTCATGTTACTTTTGATCGTTTTCATGGTTTTCTTGGTTTACCTGTTGAATTTGAACCTGAAGTTCCAACAAGACCACCAAGTGCTAGCACAAGTGTTTTTGGTGTTTCAACAGAATCTATGCAGCTTTCTTTTGACGCCAGAGGAAATAGTGTACCTACAATACTGCTGTTAATGCAAAGACATCTCTACGCACAAGGAGGCCTGCAGTCCGAAGGAATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTTGTGAGGGAACAATTGAACAGAGGTGTTGTACCGAATGGCATTGACGTGCACTGCTTGGCAGGTCTTATAAAGGCTTGGTTCAGAGAACTTCCAACTGGGATATTGGACCCTCTTTCGCCGGAGCAGGTGATGCAGTCCCAAACAGAAGAAGAATGTTCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCCCTCCTAGATTGGGCAATTAACCTAATGGCAGACGTTGCTCAGATGGAACATTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCACATGGTAGATCCTTTGACTGCTCTGATGTACGCTGTACAAGTTATGAATTTCCTCAAGACTCTAGTAGTGATGACACTGAAAGAAAGAGAGGAGTCTATCACAAAATCAAATCCTGTTTCAGACCTAAATTCTTTTGATGATGATGGGCATCAGAGCGATTCACAAGTGCTTTTCAAGGATGACAGTGAGTACGGTAATGATTACAGCGACGAGGACACAATTTTTGTCACAGAACCTTCGCAACAAAGCCCTACATATCTTTTTAATGATGACTGTGAAACTGAATCCAAAACTCTGCCAACATATACAGAAAATTTTATTTCGAGTGGAAATAGGTTGCTGGTTGACAGTTGTCCGTGCAGCGTCGTCTCTCAAATTTGCTCTCTGGCAATTGCGGATCAAACAAAAATTTGCAACAGCAAAATCCTTCAGTTGAATACTTCTGATACAGAAAAGTGTTCAGCAGGACCAGTGGAGAAGAACAGGGGAATTGCGCTTATTGGACGAATGAATTCAAGATCTGAGTTGGCTGAAGCATGGCGTTGA 1416 0.4082 MTEVLQFPSPSSCSLNPNDSSHQTTTSLITINNHDHSHFQIQHQEEEQEQEEKDQLSILTLLIATFRKSLIGCSSTGASGGEISSSSSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPTRPPSASTSVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQSEGIFRINAENSQEEFVREQLNRGVVPNGIDVHCLAGLIKAWFRELPTGILDPLSPEQVMQSQTEEECSQLVRLLPPTEAALLDWAINLMADVAQMEHLNKMNARNIAMVFAPNMTHMVDPLTALMYAVQVMNFLKTLVVMTLKEREESITKSNPVSDLNSFDDDGHQSDSQVLFKDDSEYGNDYSDEDTIFVTEPSQQSPTYLFNDDCETESKTLPTYTENFISSGNRLLVDSCPCSVVSQICSLAIADQTKICNSKILQLNTSDTEKCSAGPVEKNRGIALIGRMNSRSELAEAWR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04485 471 Gene3D Rho GTPase activation protein 127 326 IPR008936 -
Trre13g04485 471 Pfam RhoGAP domain 156 290 IPR000198 GO:0007165
Trre13g04485 471 SMART RhoGAP_3 153 316 IPR000198 GO:0007165
Trre13g04485 471 SUPERFAMILY GTPase activation domain, GAP 133 313 IPR008936 -
Trre13g04485 471 Gene3D CRIB domain 88 123 IPR036936 -
Trre13g04485 471 CDD CRIB 92 132 - -
Trre13g04485 471 MobiDBLite consensus disorder prediction 1 24 - -
Trre13g04485 471 SMART PBD_5 94 128 IPR000095 -
Trre13g04485 471 Pfam P21-Rho-binding domain 93 120 IPR000095 -
Trre13g04485 471 FunFam Rho GTPase-activating protein 5 124 317 - -
Trre13g04485 471 ProSiteProfiles CRIB domain profile. 94 107 IPR000095 -
Trre13g04485 471 PANTHER MKIAA1688 PROTEIN 1 379 IPR044785 GO:0005096
Trre13g04485 471 CDD RhoGAP 156 311 - -
Trre13g04485 471 ProSiteProfiles Rho GTPase-activating proteins domain profile. 139 324 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04485 Trre-Chr13 52401465 52405684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04485 - - gmx:100783118 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04485 13 52401465 52405684 Trre13g04485 13 52401465 52405684 ECH