Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04484 ATGGAAGCAGTACTTGCGTCCCGCCATTTCTCGACGCCTCTCTCTCACCATCGAACCACCTTCTCCTGCTCCTCCTCCTCTTCTTCTATCAAGCTTGGCTCTTCCCTTTCTTTCAGGAATTCCTTCGCTAAAGATATATGGGGATTGGTTCAGTCGAAGAGCATAACTGTCAAACGAACGGACATGATTCGTCCAGTTATCGTCAGGGCTGAAATGTTCGGTCAGTTAACTACTGGTCTTGAATCTGCCTGGAACAAGCTCAAAGGAGAAGAGATTTTGACCAAAGAGAATATTGAGGAGCCTATGCGAGATATAAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGATTTGTGCAATCTGTTAGTGATCAAGCTGTGGGCGTTGGAGTTGTTAAAGGAGTCAAACCCGATCAGCAATTGGTTAAGATTGTTCATGATGAACTTGTAAAATTGATGGGCGGAGAGGTTTCTGAACTGACTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAGTTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTACTATTTTGGGCAAACAGGTGAATGTGCCTGTCTATGCAGCAGGTACCGATGTCAAACCTTCAGATATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAATATTGATGTGGTTATTGTTGATACTGCTGGTAGGCTGCAGATAGACAAAGCCATGATGGATGAATTAAAAGATGTGAAACGGGTACTGAATCCAACAGAAGTCTTGTTAGTCGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGGATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTTGTAGGACGGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGACCGAATGGCTGGACGCATACTAGGAATGGGAGATGTTCTTTCATTTGTGGAAAAGGCGCAAGAAGTTATGCAACAAGAAGAAGCTGAAGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCAAAAATGGGTTCTGTTTCTCGTGTTATTGGGATGATTCCTGGCATGGCTAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGCAGAATATGGAAGTGATAATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAACTGTTGGCCCAATCGCCTATTAAGAGGAAAAGAGTTGCCAAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTCATAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAAATTAATGGGTGTAATGGAAGGTGGATCATTGCCAACACTTAGTAATCTTGAGGAAGCACTTAAAACAGATGAACAGGCTCCAGCTGGTACCGCAAGGAGGAAAAAGAAATGGTCACAGAGATATTTTGGGCGCAGATGA 1635 0.4385 MEAVLASRHFSTPLSHHRTTFSCSSSSSSIKLGSSLSFRNSFAKDIWGLVQSKSITVKRTDMIRPVIVRAEMFGQLTTGLESAWNKLKGEEILTKENIEEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVVKGVKPDQQLVKIVHDELVKLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLASYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVNVPVYAAGTDVKPSDIAKQGFEEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEEAEDLQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMAKVTPAQIREAEKNLQNMEVIIEAMTPEEREKPELLAQSPIKRKRVAKDSGKTEQQVSQLIAQLFQMRVRMKKLMGVMEGGSLPTLSNLEEALKTDEQAPAGTARRKKKWSQRYFGRR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04484 544 Gene3D - 75 376 IPR042101 -
Trre13g04484 544 Pfam SRP54-type protein, helical bundle domain 76 153 IPR013822 GO:0005525|GO:0006614
Trre13g04484 544 SMART AAA_5 170 317 IPR003593 GO:0016887
Trre13g04484 544 Hamap Signal recognition particle 54 kDa protein [srp54]. 76 516 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Trre13g04484 544 Pfam Signal peptide binding domain 397 495 IPR004125 GO:0006614|GO:0008312|GO:0048500
Trre13g04484 544 SMART SRP54_N_2 72 157 IPR013822 GO:0005525|GO:0006614
Trre13g04484 544 NCBIfam signal recognition particle protein 74 499 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Trre13g04484 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 424 IPR027417 -
Trre13g04484 544 FunFam Signal recognition particle 54 kDa subunit 161 355 - -
Trre13g04484 544 SMART SRP54_3 171 366 IPR000897 GO:0005525|GO:0006614
Trre13g04484 544 CDD SRP_G 172 364 - -
Trre13g04484 544 Gene3D - 161 355 IPR027417 -
Trre13g04484 544 MobiDBLite consensus disorder prediction 521 544 - -
Trre13g04484 544 Pfam SRP54-type protein, GTPase domain 171 366 IPR000897 GO:0005525|GO:0006614
Trre13g04484 544 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 339 352 IPR000897 GO:0005525|GO:0006614
Trre13g04484 544 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 72 511 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Trre13g04484 544 SUPERFAMILY Signal peptide-binding domain 397 498 IPR036891 GO:0006614|GO:0008312|GO:0048500
Trre13g04484 544 Gene3D - 377 501 IPR036891 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04484 Trre-Chr13 52391932 52399623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04484 K03106 - gmx:100782581 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04484 13 52391932 52399623 Trre13g04484 13 52391932 52399623 ECH