Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04476 ATGCTAATTCCTTCTCTTTCTCTTCAATCGATCTCATTTCATGGAAAACCTAACAACAAAATTCTCTCTATCACCAATTCTGCATCTTCCGGTAACAGATTAAACACTCAGCGAAAAACCATATCAGCTTTCGAAGCTCGAATTTCACTCATTTTTGCTCTCGCTTCTCAATCCACCTCTCTCTCCCAGCGACTTGTTACCGATGTAGCTACTGAGACTGCAAAATATTTGTTTCCGAAAAGATTTGAAAGTCGAACTCTCGAAGAAGCGTTGATGACAGTTCCCGACCTTGAGACTGTCAAGTTCAAAGTTCTAACTAGAAAGGATCAGTATGAGATTAGGGAAATTGAGCCTTACTTTGTAGCAGAGACTACAATGCCAGGGAAGAGTGGATTTGATTTCAGTGGTGCTTCTCAGTCATTTAATGCCCTTGCTGAGTACCTTTTTGGTAAGAATACAACGAAGGAGAAAATGGAGATGACTACACCCGTTATTACCAGTAAGAATCAATCCGACGGGGTTAAAATGGATATGACAACTCCCGTGTTAACAACAAAGACGGGAGATCAAGATAAATGGAAAATGTCTTTTGTCTTGCCTTCAAAGTACGGTGCTAACTTGCCACTGCCTAAAGATTCCTCTGTGACAATTAGAGAGGTGTCTAGAAAAATAGTTGCTGTAGTTTCCTTTTCAGGTTTTGTGAATGATGAAGAAGTTAAGCAGCGTGAACTGAAACTAAGAGAAGCTCTGAAAAATGATGGACAGTTCAAAATTAAAGAGGGAACTGCAGTAGAGATTGCACAGTACAATCCCCCATTTTCTCTTCCATTCCAACGCCGTAATGAGATTGCATTGGAGGTGGAGTGGAAAAATAAGTAA 879 0.4016 MLIPSLSLQSISFHGKPNNKILSITNSASSGNRLNTQRKTISAFEARISLIFALASQSTSLSQRLVTDVATETAKYLFPKRFESRTLEEALMTVPDLETVKFKVLTRKDQYEIREIEPYFVAETTMPGKSGFDFSGASQSFNALAEYLFGKNTTKEKMEMTTPVITSKNQSDGVKMDMTTPVLTTKTGDQDKWKMSFVLPSKYGANLPLPKDSSVTIREVSRKIVAVVSFSGFVNDEEVKQRELKLREALKNDGQFKIKEGTAVEIAQYNPPFSLPFQRRNEIALEVEWKNK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04476 292 Gene3D Regulatory factor, effector binding domain 96 170 IPR011256 -
Trre13g04476 292 Gene3D Regulatory factor, effector binding domain 171 292 IPR011256 -
Trre13g04476 292 PANTHER HEME-BINDING PROTEIN-RELATED 64 167 IPR006917 -
Trre13g04476 292 Pfam SOUL heme-binding protein 165 285 IPR006917 -
Trre13g04476 292 SUPERFAMILY Probable bacterial effector-binding domain 92 168 IPR011256 -
Trre13g04476 292 SUPERFAMILY Probable bacterial effector-binding domain 169 287 IPR011256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04476 Trre-Chr13 52317863 52320643 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04476 - - psat:127125647 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04476 13 52317863 52320643 Trre13g04476 13 52317863 52320643 ECH