LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04474	ATGAAGAAGCATTTACTAAAACCAATACCAAAACCACCACCACCACAAATCCTCAACCCACCACCGCCACCACCACAACCAAACTCATCTCTCTTACCTCCCACACTCTCTCCCACCCAAAACTACACCCACTTCATCCAATTCCTCAACACCTATCTCACCCCACCACTCACCCCACAAACCCTCACTCATTTCCTCAAATCAAAGCTCCACCATCACCCTTCATTCACCCACTACGATTTCCATCTTTTCACTTGGGCTTCAACTCTCGACACTTTCTCTCACAATCATACTTCCTATCAATGGATGACACGTACTCTTGCTCTCACTCATCGTTTCTCTCTCCTCCGTACCCTCCTCACTTTCATTTCATCAAACCCTTGTAATTGCTCCCAAGCCATTTTCTCTTGTCCCGAAACTGAACCCATTTTCAGGTTAATCGATGGAAAACCGAGTGTTTCGCTGTGTAATATTTTGATTCATGGGTTTGTTAAATCGGGTAGGAATTTTAAGTTTAATTTTGCATTGGAGATGTTTGAGGAAATGCGCAAAATGGGGTGTCATCCAAATGTTGTTACTTTTAATACTTTGATTAGAGGGTTGTTTAGGGAGCGTAGGATTGATGAAGGGATTGGGATGGTTTATGAGATGATTGAATTGAGATGTCAACTTTCTAATGTTACTTGTGAGATTTTGGTTGATGGGCTTTGTAAGGAAGGTCGGGTTTTTCAAGCGTGTGATTTGTTGATGGAGTTATCTAAGAGAGGGGTTTTGCCTAAAGGGTATGATTATTTTGTTTTGGTGGAAATTTTGTGCGGGAAAGGAGATGCTTTTAAAGCTTTGGAGGTTATTTATGAGTTATGGAGCAAAGGTTGTGTTCCTAGCTTGATTTCTTGTATTGTGATGATTGATGGTTTGAGAGGATTGGGGAAGATTGAAGAGGCAATGAGATTGGTGGAAAAAATGCTTAAAGAAGAGGGTATGGTACTTGATGTTGTCACTTTCAATTCTGTGCTTCAAGATGTTTGCGATGCGGGAAGGACAGAAGAGGCAAATAGGTTGAGATTACTTGCTTCGAGCAAGGGTTTGGAACCCGATGGCATGACTTATAAAATTCTGGTTAATGGGTATAGAGGAGAGGGAAATCAAACGGAAGGTGATTTAGTGGTAAACGAAATGTTGGACAGGGGTTTTATACCTGATCTTGCTGCATATAATAAATTGATGGATGGGCTATCTAATTGTCAACGCCCCAGACGGTATTATCAAGTGAACAAAATTGGCGGCTGA	1290	0.4147	MKKHLLKPIPKPPPPQILNPPPPPPQPNSSLLPPTLSPTQNYTHFIQFLNTYLTPPLTPQTLTHFLKSKLHHHPSFTHYDFHLFTWASTLDTFSHNHTSYQWMTRTLALTHRFSLLRTLLTFISSNPCNCSQAIFSCPETEPIFRLIDGKPSVSLCNILIHGFVKSGRNFKFNFALEMFEEMRKMGCHPNVVTFNTLIRGLFRERRIDEGIGMVYEMIELRCQLSNVTCEILVDGLCKEGRVFQACDLLMELSKRGVLPKGYDYFVLVEILCGKGDAFKALEVIYELWSKGCVPSLISCIVMIDGLRGLGKIEEAMRLVEKMLKEEGMVLDVVTFNSVLQDVCDAGRTEEANRLRLLASSKGLEPDGMTYKILVNGYRGEGNQTEGDLVVNEMLDRGFIPDLAAYNKLMDGLSNCQRPRRYYQVNKIGG	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04474	429	Pfam	PPR repeat family	151	202	IPR002885	-
	Trre13g04474	429	Pfam	PPR repeat family	331	377	IPR002885	-
	Trre13g04474	429	Gene3D	Tetratricopeptide repeat domain	310	424	IPR011990	GO:0005515
	Trre13g04474	429	Gene3D	Tetratricopeptide repeat domain	221	309	IPR011990	GO:0005515
	Trre13g04474	429	MobiDBLite	consensus disorder prediction	1	34	-	-
	Trre13g04474	429	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	152	189	IPR002885	-
	Trre13g04474	429	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	331	365	IPR002885	-
	Trre13g04474	429	MobiDBLite	consensus disorder prediction	8	32	-	-
	Trre13g04474	429	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	225	259	IPR002885	-
	Trre13g04474	429	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	190	224	IPR002885	-
	Trre13g04474	429	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	366	400	IPR002885	-
	Trre13g04474	429	Pfam	PPR repeat	227	257	IPR002885	-
	Trre13g04474	429	Pfam	PPR repeat	300	325	IPR002885	-
	Trre13g04474	429	NCBIfam	pentatricopeptide repeat	192	224	IPR002885	-
	Trre13g04474	429	NCBIfam	pentatricopeptide repeat	155	191	IPR002885	-
	Trre13g04474	429	NCBIfam	pentatricopeptide repeat	227	259	IPR002885	-
	Trre13g04474	429	NCBIfam	pentatricopeptide repeat	298	332	IPR002885	-
	Trre13g04474	429	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL	150	322	-	-
	Trre13g04474	429	Gene3D	Tetratricopeptide repeat domain	56	220	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04474	Trre-Chr13	52298873	52300330	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g04474	192	424	Miscellaneous Gene Families	AT4G11690	27.897	6.20e-24	102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04474	-		-	aprc:113860936	519.235