Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04454 ATGACAAAATGCATCAACTCTTTAATCTTGTTCCCAATCCTCTTACACACCCTATGCTTCCTTTTGTTCCCACAATACCTTCTTTCTCAAGAAAACACTTTTGTTCGTCAGCCAGCTAGTCAACTCATCATCACTCCCCATCAACGCTCGAATTCAGACCCCCAACAGGTACATATTTCATTGGTGGGGAAAGATAAGATGAGAGTGTCATGGATAACTGAAGACAAGGATACAAAAAGTGTGGTGGAGTATGGAACAAAATCAGGGGAGTATAGTGAAAAAACAATTGGAGAAAATACCTCGTACAAATATTTTTTCTATAATTCTGGTAAAATTCACAACACTGTGATTGGGCCATTGGAACCAAACACTACTTACTTCTACAAATGTGGAGGTTTGGGTCCAGAATTTTCCTTCAAGACACCACCATCAAAGTTTCCAATTGAATTTGTCATTGTTGGAGATTTGGGACAAACTGAATGGACTGCATCAACCCTAAAACATGTTGACAAAAGTGACTACGATGTATTCTTATTACCCGGAGATCTATCATATGCAGATTCACAACAACCATTATGGGATTCTTTTGGTCGTTTAGTAGAGCCATATGCTTGTAAAAGACCATGGATGGTTACACAAGGAAACCATGAAATTGAAATTTTTCCAATTATATACCCAAAAGGCTTTGAGGCTTATAATACACGTTGGCCCATGCCATTTCAAGAGAGTGGATCCAACTCAAATCTTTATTATTCTTTTGATGTTATTGGTGCCCATATAATTATGTTAGGTTCATATGCTGATTTTAATGTTGAATCACAACAATATGAATGGCTTAAATTAGATCTTGCTAAAATTGATAGAGTGAAAACACCTTGGGTTATTACATTGGTGCATGCACCTTGGTATACTACTAATGAGGCACATCAAGGTGAAGGTGAATCAATGAGAGAAGCTATGGAAAATTTGCTCTATGAGGCTCATGTTGATTTGGTTTTTGCTGGACATGTCCATGCATACGAACGATTTACTCGAATTTATGATAACAAGGCTGATTCATGCGGTCCAATGTATGTGACAATCGGGGATGGAGGAAATCGTGAGGGACTTGCATTAAGGTTTAAGAACCCTCCAAGCCCGCTCTCATTGTTTCGAGAGCCAAGCTTTGGTCATGGAAGGTTACGAATACTAAATGAAACTCATGCACATTGGTCATGGCATCGCAACAACGATAAAGATGCTGTTGTAGCTGATGAAATATGGATAGAGAGCTTAAGCAACTTGAAAGGTTGCTCAGTGACACCAAACAACAAAGTTGCTCATGAAGAGTTGTAA 1335 0.3858 MTKCINSLILFPILLHTLCFLLFPQYLLSQENTFVRQPASQLIITPHQRSNSDPQQVHISLVGKDKMRVSWITEDKDTKSVVEYGTKSGEYSEKTIGENTSYKYFFYNSGKIHNTVIGPLEPNTTYFYKCGGLGPEFSFKTPPSKFPIEFVIVGDLGQTEWTASTLKHVDKSDYDVFLLPGDLSYADSQQPLWDSFGRLVEPYACKRPWMVTQGNHEIEIFPIIYPKGFEAYNTRWPMPFQESGSNSNLYYSFDVIGAHIIMLGSYADFNVESQQYEWLKLDLAKIDRVKTPWVITLVHAPWYTTNEAHQGEGESMREAMENLLYEAHVDLVFAGHVHAYERFTRIYDNKADSCGPMYVTIGDGGNREGLALRFKNPPSPLSLFREPSFGHGRLRILNETHAHWSWHRNNDKDAVVADEIWIESLSNLKGCSVTPNNKVAHEEL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04454 444 SUPERFAMILY Purple acid phosphatase, N-terminal domain 44 143 IPR008963 GO:0003993|GO:0046872
Trre13g04454 444 Pfam Iron/zinc purple acid phosphatase-like protein C 355 418 IPR025733 -
Trre13g04454 444 Pfam Purple acid Phosphatase, N-terminal domain 54 141 IPR015914 GO:0003993|GO:0046872
Trre13g04454 444 Gene3D - 145 430 IPR029052 -
Trre13g04454 444 Pfam Calcineurin-like phosphoesterase 150 340 IPR004843 GO:0016787
Trre13g04454 444 PANTHER ACID PHOSPHATASE RELATED 17 423 IPR039331 GO:0003993
Trre13g04454 444 CDD MPP_PAPs 147 424 IPR041792 -
Trre13g04454 444 SUPERFAMILY Metallo-dependent phosphatases 148 412 IPR029052 -
Trre13g04454 444 Gene3D - 53 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04454 Trre-Chr13 52127917 52131454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04454 38 420 Miscellaneous Gene Families AT2G03450 25.591 9.05e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04454 K22390 - gmx:100819446 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04454 13 52127917 52131454 Trre13g04454 13 52127917 52131454 ECH