Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04442 ATGGAGGTCTCAGTCTCAGATGACGATGATGAAGTTATCCTCGTTTGCACCAACCTTGATCATTCAATTCAAACAACACAAATTCTCCTTTCAACCACTGATATCATCGTTTCCGATTTATCAACATTTCTCAATTTTCACACTATCAAAATTCAGACACATCGCAATAGGCTCATTGAACAATCTATGTATTTCCGAGGCCTCCTTGGCGGAAGCTTCAGTGAATCATGCTTGGGCTCTATCACTATCGACTGGAATTTGCCTGTGTTTGTGCAAATTCTTAAGCATATGTGTGGCTGTCCATTGGATATTACTACTGAAAATGTCCTCTCTCTTTATGAGGGTGCGCTTTATTTTGGAGTGGAGACACTTCTCTTAAAGTGTGAGACTTGGCTTTCCGAGGCATTCTCTCCTAATAAATTTCGATTAACGCAAATACAGATGGAGGATTTGATCCAAATCTGGAAATTTGGCTTGGATCATGCAAGTGATTCCATTCTAAACTTATGTATTGGCTACCTAGCAAGAAATTTTATGTGGGCCAAGCAGAACATATGTTTTGGAAAAATTCCGTATAACTTGCTGTTATCTTCAGTAGAGCACCCTCATTTGACTATTGACAGTGAGATGCATCTTTCTGATGCACTTCTTCTTTGGCTTGAAAGTAACGTGGAAAATGTGGAGAGGCAGAGCAAAACAGAAGACAATTACAATGGAATTTTAAAACAAGTTCGTGTGGACCTTTTGCCTTTGTGGTTTGCTGCAGGAAAAAGAAACTCTTATAATTTTAGGCAGCTGGCTGAGGAAAGCCTTGGTTCAATTCTCAGAGCACTGAATATTCTACCGACAGGTTCCCTTGATATTTCCGGGTACAGTGACTTGCAACATCTCAGGATTCGACTTACAGAATATTCGAAGAAAATCGACCTTTCCAATTGTCCGCAAATAACATCTGCGATACTGCTTCTGTCACTCATACCTGCATCATATCTAACGGATCCCATGCAAAGGAAGATTATAGAACAATTCTTTATTAATTCTGGACATCCTATAAAAGAGAAATATGAATTCCCACAAAAACTGTTGGAACCCATCATCTTTGAAGCAGTTCAGGAAGTGGATATCTCGAAGTGTCGAACACTGCTTATTGAACATGCTGTTGATTGCTTCAGCCAGTCCTTTCCTTCTTTAAGAACATTAAAAGTAGCTTATCTTTTGCATATCAGGACAACCAGTTTCCTCCAGTTATTGGAGAAGTGCTCTTTGGTCAGCGAAATTGACTTGACTGTTGATGTTACTCCTCTAATACCAGCATCAGTTACAGTTGTATCCTCAAGTCCTGCTGTGATACCACTGGTACCAGAGAAGACCTCAAGTTTTAAGTATAAAGCAGTGGAAACCATGTCATTTCATGAATCTAGACATCGAATATCTTGTGTTACAAAGCTCACATTGGAAGGAAGAACTGATGTCAGTGATTTGAGTCTCCAGTATATCTCCAAATTATGTGTTTCATTGTGTCACCTGAATATTAAAGGATGTATTTATGTCACTGATATTGGCATATCAGATCTCATAGACCGATGTAAAAAGCTTAATTCATTAGTGGTCTGTGATACTTCATTTGGGATAAATTCAGTGCAAGCTCTTTGTTCGGCTATTTCTGATGGTGGTAACTTTCCCTCTTTACATTCTAGAGATAAGCATTTGAATTCCGTGGTGTGTAATCTTCAAGCTCTGCATATGGGTGGCTGCATAGGTGTTTCTGAGTTATCTCTACAAGATCTTATGTCCCAAACACAAGTTTTGAAGAGTCTATGCTTGAGAGGGACTCACTTGGTTGATCAGGCATTATATAATTTCAAAGGTTCTTCATTGGAGATGCTTGATGTGTCAGACACCAAGATTTCTGAAGCTGCGTTAAGTTATGTTATTCATAGACATCCAAATTTGAAGAGTCTGAAAGCAAGAGGTTGCACAAATTTGTTAAAAGGAGATAGTTCTATTGAAAAGAGAGAATGTAGCTTTTCCTCCTTGCATGACGAACTACATGCTGAGTTAGGAAAGAAGTGTAGATTGGAAGAAATTGAATTTGGTTGGGGTTTTTCTTCCTTCTCTCTAAGTGCTTTGGAACCTGCGCTGATGTCATTAAAGACCATCAATGTAGGTTTAGGTGGAATGTTAGGTGAAGATGCACTGAGAGCATTACCAGTAATCTGTCCCATGCTAGAAACAATAATTCTTTATTTTCAGGTAATATCTGATATCATTGTGACGAAAATAGCTACGTCCTTGATGAACTTACAAGTATTAGCTCTGTGCTATTGTTTTGGTGATATATCCATGTCAAGCTTCAAATTCCCCATGCAAAACCTAAGAAAGTTGAGGCTTGAAAGAGTAACCCCATGGATGACCAATGATGATTTGGTTATTTTAACTCAAAACTGTAGAAATTTGGTTGAACTTTCATTGCTGGGATGTCCACTTCTTAACTCAGATTCTCAACAGATAATTTCACGTGCATGGCCAGGCTTGGTCTCTATGCATCTAGAGGAATGTGGAGAAATAACAGCAAATGGGGTCTCTGCCCTTCTTGACTGCAGAGCTCTTGAAGATCTTCTGTTGCGTCATAATGGGCCTGGGATACAAAGAAACTTCATTTTTAATGCAGCTTCAAAGATGCCATTACTTCGAAAATTGTCACTGGATATATGTGATGCAAGTGAAGGTGAATTTGACATTCCAAAATATGCTGCAGACAGATGCTTTTTGAGTACCTTGAAGATAGCAAGATGCAAATCTCAAAGATGTTTATTTAATCTCCCAGTTCCTTCTCGTAGACGATCCGTGCATGTAGAAACACTGGTGCTTGTGTGGAACAGCAAAAGTCTCACCAGAACAGTGGTGAAGGAAAGGCTTTAG 2922 0.3901 MEVSVSDDDDEVILVCTNLDHSIQTTQILLSTTDIIVSDLSTFLNFHTIKIQTHRNRLIEQSMYFRGLLGGSFSESCLGSITIDWNLPVFVQILKHMCGCPLDITTENVLSLYEGALYFGVETLLLKCETWLSEAFSPNKFRLTQIQMEDLIQIWKFGLDHASDSILNLCIGYLARNFMWAKQNICFGKIPYNLLLSSVEHPHLTIDSEMHLSDALLLWLESNVENVERQSKTEDNYNGILKQVRVDLLPLWFAAGKRNSYNFRQLAEESLGSILRALNILPTGSLDISGYSDLQHLRIRLTEYSKKIDLSNCPQITSAILLLSLIPASYLTDPMQRKIIEQFFINSGHPIKEKYEFPQKLLEPIIFEAVQEVDISKCRTLLIEHAVDCFSQSFPSLRTLKVAYLLHIRTTSFLQLLEKCSLVSEIDLTVDVTPLIPASVTVVSSSPAVIPLVPEKTSSFKYKAVETMSFHESRHRISCVTKLTLEGRTDVSDLSLQYISKLCVSLCHLNIKGCIYVTDIGISDLIDRCKKLNSLVVCDTSFGINSVQALCSAISDGGNFPSLHSRDKHLNSVVCNLQALHMGGCIGVSELSLQDLMSQTQVLKSLCLRGTHLVDQALYNFKGSSLEMLDVSDTKISEAALSYVIHRHPNLKSLKARGCTNLLKGDSSIEKRECSFSSLHDELHAELGKKCRLEEIEFGWGFSSFSLSALEPALMSLKTINVGLGGMLGEDALRALPVICPMLETIILYFQVISDIIVTKIATSLMNLQVLALCYCFGDISMSSFKFPMQNLRKLRLERVTPWMTNDDLVILTQNCRNLVELSLLGCPLLNSDSQQIISRAWPGLVSMHLEECGEITANGVSALLDCRALEDLLLRHNGPGIQRNFIFNAASKMPLLRKLSLDICDASEGEFDIPKYAADRCFLSTLKIARCKSQRCLFNLPVPSRRRSVHVETLVLVWNSKSLTRTVVKERL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04442 973 Gene3D - 146 275 - -
Trre13g04442 973 Pfam BTB And C-terminal Kelch 152 253 IPR011705 -
Trre13g04442 973 CDD BTB_POZ_ZBTB_KLHL-like 50 119 - -
Trre13g04442 973 PANTHER UNCHARACTERIZED 281 670 - -
Trre13g04442 973 Gene3D Potassium Channel Kv1.1; Chain A 18 138 IPR011333 -
Trre13g04442 973 SUPERFAMILY RNI-like 470 777 - -
Trre13g04442 973 Gene3D Ribonuclease Inhibitor 559 937 IPR032675 -
Trre13g04442 973 SMART LRR_CC_2 816 841 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 503 528 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 789 815 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 842 867 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 574 599 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 529 553 IPR006553 -
Trre13g04442 973 SMART LRR_CC_2 740 764 IPR006553 -
Trre13g04442 973 SUPERFAMILY POZ domain 45 133 IPR011333 -
Trre13g04442 973 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Trre13g04442 973 SUPERFAMILY RNI-like 684 908 - -
Trre13g04442 973 Pfam BTB/POZ domain 47 133 IPR000210 GO:0005515
Trre13g04442 973 Gene3D Ribonuclease Inhibitor 452 557 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04442 Trre-Chr13 52031664 52041882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04442 - - gmx:100791594 1424.07