Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04438 ATGGTTTACACAATATCAGGAATTCGATTTCCCGTTCTTCCTTCTCTGCAAAACTCGACCTTACGTGGTGCCGATCGCAGAACTTCTTCATCTCACTCCTTCCTTCTCAACAAGAAGAACTACTCGTCATTCTCTCGGACATCGCTTTATGCAAAGTTTTCCCGCGATTCTGAAACCAAGTCCTCCACAATTGCTGAATCCGATAAAGTACTTATTCCAGAAGATCAAGATGACTCTGCATCCGTGACGGATCAACTTGAAAATCCTGATATAACCACAGAGGATGCACAGAACTTGGAGGATTTAACTATGAAAGATGGGAATAAGTACAATCTTGATGATGCAGCTAGCAGTTATAGAGAGGTTGGGGATGCAAAAGGTTCTGTTGTGTCATCATCACTTGTAGATGTTAACACCGACGCTCAAGTCAAGAAGACATCAGTTCATTCAGACAAGAAAGTAAAAATAGATAAACCTAAGATCATTCCTCCACCTGGTACTGGGCAGAAAATATATGAGATTGATCCATTTTTAGAACCTTACCGTCAGCATCTTGATTTCCGTTATGGACAATACAAAAAACTTCGGGAGGAAATTGACAAGTATGAAGGTGGTCTTGATGCATTTTCTCGTGGGTACGAAAAGTTAGGCTTCACACGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCAGCATTAGTTGGAGATTTCAACAATTGGAATCCAAATGCAGATGTAATGACCCGGGATGATTTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGCTGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATCCACATGGATACTCCCTCTGGGATCAAGGACTCAATTCCTGCTTGGATCAAATTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAGCGACCAGACTCGATTAGAATATACGAGGCACACATTGGAATGAGTAGCCCGGAGCCAAAAATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGCATAAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTACTATGCTAGCTTTGGGTATCATGTTACTAATTTCTTTGCACCTAGCAGTCGGTTTGGAACTCCAGAAGATCTTAAATCTCTGATAGACAGAGCCCATGAACTAGGCCTGCTTGTCCTGATGGATATTGTACATAGCCATGCATCAAATAACACATTGGATGGCCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATTCTGGGTCACGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTCCTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATATAAGTTTGACGGATTTCGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGACTGCAGGTAACTTTTACTGGAAACTACAATGAGTATTTTGGTTTTGCAACTGATGTTGAAGCTGTGGTTTACCTGATGCTGGTTAATGATCTCATCCATGGGCTCTTCCCTGAAGCCGTTTCAATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCGACGCAAGATGGTGGGATTGGCTTTAACTACCGCTTGCATATGGCCGTTGCAGACAAGTGGATTGAGCTTCTCAAGAAAAAAGATGAAGACTGGAAAATGGGTGATATAGTCCACACACTAACAAACAGAAGGTGGCTGGAAAATTGTGTGGTTTATGCTGAAAGTCATGACCAAGCCTTGGTTGGTGACAAGACACTAGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCTACTCCTCTAATAGATCGTGGTATTGCATTACACAAAATGATTAGGCTTATTACTATGGGCCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTCGGCCATCCTGAGTGGATCGATTTTCCAAGGGGTGATCAACATCTTCCTAATGGCAAAGTGGTTCCTGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGGGTGATGCAGAATATCTAAGATATCGGGGAATGCAAGAATTTGATCGAGCTATGCAGCATCTAGAAGAAAGATATCATTTCATGATTTCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAATCTTCGAGAGGGACAACCTGGTCTTTGTATTCAATTTTCATTGGACCAACAGTTATTCAGATTACAAAGTTGGCTGTTTAAAGCCAGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGCTTCAATAGGATCAGTCACACTGCTGAGTACTTCACCTCCGAAGGGTGGTATGATGACCGGCCTCGATCATTCCTCGTGTATGCACCTTGTAGAACAGCGGTGGTGTATGCCCTTGCAGATGTTGAATCAGAGCCAGTTGAACTGTCGGTTGGAGTTGAATCAGAGCCAGTTGAGCTGTCGGGTGGAGTTGAATCAGAGCCAGTTCAACAGTCAGTTGAAGTTGAACCCTGA 2658 0.4236 MVYTISGIRFPVLPSLQNSTLRGADRRTSSSHSFLLNKKNYSSFSRTSLYAKFSRDSETKSSTIAESDKVLIPEDQDDSASVTDQLENPDITTEDAQNLEDLTMKDGNKYNLDDAASSYREVGDAKGSVVSSSLVDVNTDAQVKKTSVHSDKKVKIDKPKIIPPPGTGQKIYEIDPFLEPYRQHLDFRYGQYKKLREEIDKYEGGLDAFSRGYEKLGFTRSATGITYREWAPGAKSAALVGDFNNWNPNADVMTRDDFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPDSIRIYEAHIGMSSPEPKINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVTFTGNYNEYFGFATDVEAVVYLMLVNDLIHGLFPEAVSIGEDVSGMPTFCLPTQDGGIGFNYRLHMAVADKWIELLKKKDEDWKMGDIVHTLTNRRWLENCVVYAESHDQALVGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKVVPGNNNSFDKCRRRFDLGDAEYLRYRGMQEFDRAMQHLEERYHFMISEHQYISRKNEGDKVIIFERDNLVFVFNFHWTNSYSDYKVGCLKPGKYKIVLDSDDALFGGFNRISHTAEYFTSEGWYDDRPRSFLVYAPCRTAVVYALADVESEPVELSVGVESEPVELSGGVESEPVQQSVEVEP 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04438 885 Gene3D Immunoglobulins 211 323 IPR013783 -
Trre13g04438 885 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 749 849 - -
Trre13g04438 885 SMART aamy 354 714 IPR006047 GO:0005975
Trre13g04438 885 SUPERFAMILY (Trans)glycosidases 327 745 IPR017853 -
Trre13g04438 885 FunFam 1,4-alpha-glucan branching enzyme 318 744 - -
Trre13g04438 885 Gene3D - 749 856 IPR013780 -
Trre13g04438 885 SUPERFAMILY Glycosyl hydrolase domain 750 847 - -
Trre13g04438 885 Gene3D Glycosidases 175 744 - -
Trre13g04438 885 Pfam Alpha amylase, catalytic domain 364 435 IPR006047 GO:0005975
Trre13g04438 885 Pfam Alpha amylase, C-terminal all-beta domain 753 846 IPR006048 GO:0003824|GO:0005975|GO:0043169
Trre13g04438 885 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 211 323 - -
Trre13g04438 885 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 144 848 - -
Trre13g04438 885 CDD E_set_GBE_euk_N 223 316 - -
Trre13g04438 885 SUPERFAMILY E set domains 209 318 IPR014756 -
Trre13g04438 885 MobiDBLite consensus disorder prediction 861 885 - -
Trre13g04438 885 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 215 298 IPR004193 GO:0004553|GO:0005975
Trre13g04438 885 CDD AmyAc_bac_euk_BE 320 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04438 Trre-Chr13 51929841 51946519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04438 4 849 Glycoside Hydrolase AT5G03650 72.792 0.0 1292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04438 K00700 - gmx:100785968 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04438 13 51929841 51946519 Trre13g04438 13 51929841 51946519 ECH