Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04419 ATGTCTGCAATTCATCACCTTCAATTCACAATCATCATCATTCTATCCCTCTCAACAACGTTAACATCATCTTTAACAACTTCAATTCCACAAGAGCTTCTCAAAGGCTTCTCCACAGTTCCACTCTCATCACCTTCAACATCTTTTCAACCCATTCTCACCGATTCAACTGGTAATTTCTCACTCGGCTTCCTCCGTCAAAACCAAAACGATCTAAAACTAGCCATCATTCACACACTTTCTTCCCAACCATTCTGGATCGCTAACCCAACTCACTCTGTTTCTTGGTCACACACCACTCGTCTCTTCTTCAACGGCAGTCTTGTTTTGTCGGACCCACAAAGAACCACCACATGGTCAACCGCCACAGACGGTGACCGTGTGATTCTCCTCAACACCTCAAATTTACAAGTCCAAACAAAAAATGTACCACTTTGGGAAAGTTTTCATTTTCCCACAAATACCCTTGTTCAGAATCAAAATTTCACTTCTAACATGTCGTTAGTTTCTTCTAACGGTCTTTACTCGTTAAGATTAGGTGATAAATTCATGGGTTTATACGAAAACAACGGCGAAGAAAAAGGAAGGTCGTTATCAAAACGGTTATTTCTGTTATACTGGAAACGATCGGCGTTAGAAACTAAAGCTTTAATAGTAAACGGTGAAGGACCCATTTATGCAAGAGTTAGCACTGAGGGTTATATAGGAATGTACCAAACTAGCCCTAAACCTGTTGATGTTCAGAAGTTTAATAGTTTTCAACAAACGTCGTCGTTTCTTTTAGTTCGGTTAGAATCTGATGGAAATCTTAAAGGGTATTATTGGGATATAACAAAGTCTAGTTGGATGCTTAATTTTCAAGCTATTACTGAAACTTGTGAGCTTCCTAATCCTTGTGGTTCGTATGGTTTGTGTACTCCTGGTGGGTCTAGTTGTTCTTGTTTAGATAACCAAACCCGGTTTGAACCGGGTGAGTCGGGTGAACCGGGTGGTTGTTTTAATAATGTTGGTGGTGAAGATGGAGGATTATGCGGTGGTGATGGGATTGGTGGAGATAACGGTTACTATGTTTTGAGAAGAAACGGCGTGGAGCCACCGCATAAGGAGTTATTAGAAGAAGTAACGACGTTATCTTTAACGGAATGTGAAAATTTGTGTGAGAAAGACTGTAGGTGTTGGGGAGCGTTGTATAATAACCAAACCGGGTTTTGTTATGTTTTGGATTATCCAATTGGGACAATGTTGGGAACAAGGGATGAGTCAAAGGTGGGTTATTTTAAGGTGAGGAAAGGTGCACGGGAGAGGAATAAGGTTGGGGTTATAATTGGAATTGTTGTTGGTCTTTTGTTTGGTGTTATTGTTGTCGGTGGGGTTGGGATTTGTATAATGAGGTGGAAAAAGAAGAAAGGGAATCTAAAAGAGGATGATGTTAATTGGGCTTCACCCGGCCCGTATAGGAATCTTGGGTCCGAAAGTTTTAGATCCGTTGAGATGTCGGGTAGTGCACAATAA 1512 0.4087 MSAIHHLQFTIIIILSLSTTLTSSLTTSIPQELLKGFSTVPLSSPSTSFQPILTDSTGNFSLGFLRQNQNDLKLAIIHTLSSQPFWIANPTHSVSWSHTTRLFFNGSLVLSDPQRTTTWSTATDGDRVILLNTSNLQVQTKNVPLWESFHFPTNTLVQNQNFTSNMSLVSSNGLYSLRLGDKFMGLYENNGEEKGRSLSKRLFLLYWKRSALETKALIVNGEGPIYARVSTEGYIGMYQTSPKPVDVQKFNSFQQTSSFLLVRLESDGNLKGYYWDITKSSWMLNFQAITETCELPNPCGSYGLCTPGGSSCSCLDNQTRFEPGESGEPGGCFNNVGGEDGGLCGGDGIGGDNGYYVLRRNGVEPPHKELLEEVTTLSLTECENLCEKDCRCWGALYNNQTGFCYVLDYPIGTMLGTRDESKVGYFKVRKGARERNKVGVIIGIVVGLLFGVIVVGGVGICIMRWKKKKGNLKEDDVNWASPGPYRNLGSESFRSVEMSGSAQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04419 503 SMART blect_4 39 152 IPR001480 -
Trre13g04419 503 Pfam D-mannose binding lectin 85 173 IPR001480 -
Trre13g04419 503 Pfam S-locus glycoprotein domain 253 316 IPR000858 GO:0048544
Trre13g04419 503 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 48 459 - -
Trre13g04419 503 ProSiteProfiles Bulb-type lectin domain profile. 38 158 IPR001480 -
Trre13g04419 503 Gene3D - 42 184 - -
Trre13g04419 503 Pfam PAN domain 372 409 IPR003609 -
Trre13g04419 503 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 154 IPR036426 -
Trre13g04419 503 PIRSF SLG 1 441 IPR035446 -
Trre13g04419 503 ProSiteProfiles PAN/Apple domain profile. 344 430 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04419 Trre-Chr13 51748916 51750427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04419 - - tpra:123890423 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04419 13 51748916 51750427 Trre13g04419 13 51748916 51750427 ECH