Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04413 ATGGCGGAGCATTTGGCATCGATATTCGGAACTGAGAAAGACAGAGTTAACTGTCCTTTTTACTTTAAGATCGGAGCTTGTAGACATGGTGACCGCTGTTCTCGTCTTCATACTAAACCAACCATTAGTCCCACTCTTGTTCTCTCAAATATGTATCAAAGACCTGATATGAACCTTAACTTCATCAACCCTACCCCTAATCAACCTCAACAGCCTCAACCTCCTCAACAACCTCAACCTGAATCTCTTGACCCTGACAAACTCCAAGAACACTTCGATGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGTCAAATTCAGAGCTTGAATATTTGTGATAATTTGGCTGATCACATGGTTGGCAATGTATATGTTCAATATAAAGAGGAAGACCATGCTTCTAATGCCCTAGTGAATCTCACTGGAAGATTTTATTCAGGTCGACCGATCATTGTTGACTTCTCACCTGTTACGGATTTTAGAGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGGGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGCGAAAGCGATTATTTGGAAGAAGTAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCTCCAAGGAATCGTAACTATGAAGGGCGTTCATATTCTGGTCGTGGTTCTGGTAGAAGGGATTCTGAAAGGTCTCATGGCCACCATGGTAGGAGGCCAAGAAGCCGCAGTCCTCGTCATAGAGGAAAGCGAAGTAGAAGTCCAGCGGGCAGGGACAGGAGTCCGAATCCGATCAGAGAAAGAGAAACTAGTGTAGAAAGGAGAGCAAGAATAGAACAATGGAACAGGGAGAAAGAAGTTGACGATTCTGGTAACAAGGACACTAAGAGTAACAATGATTATGAAGAGCCGAGCTTAAAAAATGGCAATGAGTCAGGTAATCATCAGATATAG 984 0.4289 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQQPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHASNALVNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDSERSHGHHGRRPRSRSPRHRGKRSRSPAGRDRSPNPIRERETSVERRARIEQWNREKEVDDSGNKDTKSNNDYEEPSLKNGNESGNHQI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04413 327 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Trre13g04413 327 SMART rrm2_1 81 156 IPR003954 GO:0003676
Trre13g04413 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Trre13g04413 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 187 IPR000571 GO:0046872
Trre13g04413 327 Gene3D - 43 159 IPR012677 -
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 179 191 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 144 168 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 89 104 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 PRINTS U2 auxiliary factor small subunit signature 117 139 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 MobiDBLite consensus disorder prediction 58 87 - -
Trre13g04413 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Trre13g04413 327 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Trre13g04413 327 MobiDBLite consensus disorder prediction 242 264 - -
Trre13g04413 327 MobiDBLite consensus disorder prediction 265 311 - -
Trre13g04413 327 CDD RRM_U2AF35B 44 159 - -
Trre13g04413 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 153 IPR000504 GO:0003723
Trre13g04413 327 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 291 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trre13g04413 327 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Trre13g04413 327 SMART c3hfinal6 162 188 IPR000571 GO:0046872
Trre13g04413 327 MobiDBLite consensus disorder prediction 67 81 - -
Trre13g04413 327 MobiDBLite consensus disorder prediction 203 327 - -
Trre13g04413 327 SUPERFAMILY RNA-binding domain, RBD 91 163 IPR035979 GO:0003676
Trre13g04413 327 MobiDBLite consensus disorder prediction 312 327 - -
Trre13g04413 327 FunFam Splicing factor U2AF small subunit 45 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04413 Trre-Chr13 51702687 51705700 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04413 K12836 - gmx:100783847 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04413 13 51702687 51705700 Trre13g04413 13 51702687 51705700 ECH