Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04395 ATGGATGCACCTCGTAAACACCAGGTATCGTTAAGAGGAGCGAGTGCGAAGGAAATTACGCGAGATGATCTTCTTCAGAAGGTCTCACGAGAAAGAGAGCTTCGCAATTATGCAAAACGTGCTGCTGCTGCTGCTCTCTTCGTTCAGAGAGTATGGAGGCGCTTCAAGGTTACAAAAGCAGTTGCTCTGAAGCTTCAGCAGGAATGGGAGACATCGGTGAACAGTTATACTGGGGTGATGACTGCAAATTGGATTTCAAACAATCTGTTGAGGCCATTTCTATTCTTTGTGACCCGTTTCTCAAATCGGTATGAGAAGGTCCGTAGCAAGAAAATAGACTCTATGAGGACGTGCTTTACGTTCCTGTTGGAAAGCCTGCAATCTTCTGATTCAAAACGGAACTTTTGCTTTTTGGCGGTTGGTACAGCTGAAGAGAGAAGAATTTGGAGTTACCAGGCACAGCAACTTACTTCTCTTGGTTTTTCGATTCTTTCAGAGTACAGTGAATGCAATTCAGGGGCTCAAGATATTACTACTGTTACATATCTAGCAATGCGTATTCTTGTAATGTTAACTGATCTAAAAGGATGGAAAGGCATTACAGACGACAACCGCTTAGATGCAGATTTAGCCGTGCAAGGTTTAGTTGAGTTTACAGGGAGTAAAAAAAGTGGTAGTTATGTTTCCATTGCCAGATATATTAGTGCATTGGATAATTATTCTTCCCAGATGAAAGTTATCACCCAGGCAGATGAGAAATTTGTTATTACTGCAAGTGCAATAACTTTAGCAGTGCGGCCGTTTTACCTGACAAACTCTGATGGAGAAAGGCCTGATATGTTGAATGTCAACCATGGTGCTAAGCAGTATATTGTATATCTAATGACTATTCCTTGGCTTGTGCAACATCTCCCACCTGTTCTTCTACCTGCTTTAAAGCACAAATCAATTTTGTTCACATGTTTTCAGACACTATTGATTTTGAAAGAGAATGTTTTAATGGATATGTCAGAGTTGGTTAAGTCAGAAACTCTTGTTTCTGTCAAGGCTATTCCACCAGTTGGTTGGTCTCTCGCTAACTTTATATGTCTAGCAACAGGGAATGAAAATAATTCTGTAGACTCTGGATCCTTCAATCAAGGTTTAGACTGTGCATTGTATGTCCATGTTATTGTCACTCTAGCAGAAAACCTACTGGCTTGTCTTGATAATATTGAGTGGGTCAAAAAGAAGAAGAAATCTCTCCAAACTGATGTTGAAAGTTCAACCCATGAGTCGTTAATAATGTCATACATGGATCAATTTAGGCCCGTTTGTCAGCAATGGCATCTCACAAGTCTTTTAGCATCAGTGAATAGAGATACCACTAACAAGGCTGAGACTTCGATATCAAATAGTCTAGAATATTTGGGGAAGCTAGATCTGTGTGATGTTGCACTTTTTTATTCTAACTTGCTTAGAATATTTTCAGCCTTGAGTCCAATTCATGGTTCATTGTCAGTTCTTAACATGCTAGCATTTACTCCTGGATTTCTTCTGAGATTGTGGGGTGAACTTGAGGATTCCTTTTTCTCTGGAGACAAACATATGTCGGATAATCACACAAGTGAAAATGGAAAACATAAAGCTTTTGAGAAGATTCCAAAACAGTCAAGTAAAGATGGGGCCAGTAAGTGGGTCAGCGTACTTAATAAATTTACAGGTAAGTCACAATCTGCAACAGACAGCTCAAATCCCATTGGCAGTCACTCTGCACCTAGTGGAGTGAATTTAGATCCATCAGATGTATGGGACATAGAACCTATGAGGCATGGTCCACAAGGCATTCCAAAAAGTATGTTTGCGACACTTCATCTTTTCTGTGCGACTTATTCTCACCTGCTTTTAGTTCTTGACGACATAGAGTTTTATGAGAAACAGGTTCCATTCAAGTTAGAGCAGCAGCGAAGAATTGCATCAATGCTCAATACCCTGGTCTATAATGGTTTGTCCCATGGTAATGGTCATCATAATAGGCCTCTCATGGATTGTGCTGTCAGATGTTTACATTTAATGTATGAACGGGATTGCAGACACCCATTTTGTCCTCCAGATCTGTGGCTATCTCCTGCTAGAAAAAGTCGGCCACCAGTTGCAGTTGCTACTAGAACTCATGAAATTTTTTCAGCCAACCTGAGATCTGATGATTCATCATCTTCCATGAGCGTAGGCTCTGTTATCACCATGACTCCTCATGTTTTCCCATTTCAAGAAAGAGTTGAGATGTTTCGTGAGTTTATCAAGATGGATAAAGCCTCACGCAAAATGGCTGGTGAAATTTCCGAACCTGGCTCACGAACCATTGAGATAGTAGTACGTCGGGGTCATACTGTTGAAGATGGTTTTCAACAATTAAATTCGCTTGGGTCAAAGTTGAAGTCGTCCATCCATGTATCATTTGTCAGTGAATGTGGCCTTACGGAGGCTGGTCTGGACTATGGTGGATTGTCGAAAGAGTTTTTGACTGATTTATCAAAAGAAGCATTTTCCCCTGAATACGGGCTTTTTTCCCAAACCTCAACTTCTGACAGTCTCCTAATTCCAACTGCATCTGCAAGATTTTTGGACAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAATAGTTGGTAAAGCTCTTTATGAAGGGATATTACTTGATTACTCTTTCTCGCATGTTTTTGTACAAAAGCTATTGGGGCGATATAGCTTTCTTGATGAATTATCAACACTCGACCCAGAGCTATACAAGAATCTTATGTATGTCAAGAACTATGATGGTGATGTCAAGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAAAAGACACGTGGTTGAGCTCAAGTCTGGTGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAATACATACATGCGATGGCAGACTACAAACTCAACCAACAGATATTTCCCTTTTCAAATGCATTTTATAGAGGGCTGGCCGATCTTATATCTCCATCCTGGTTGAAATTATTCAACGCTAGTGAATTTAATCAGTTACTTTCAGGTGGCAATTATGATATTGACATTGATGATTTTAAAAGTAACACACGATACACTGGTGGTTACTGTGAGGGGAGCCGGACAATCAAAATATTTTGGGAGGTGATTAAAGGCTTTGAACCAAAAGACCGTTGTAAACTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTACAGCCACCTTTTACCATCCACAAGGTTGCATGTGATGTCCCTCTTTGGGCGACAATTGGAGGACAAGATGTAGAGCGGCTTCCTTCAGCTTCAACCTGCTACAATACCCTTAAGCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCAAATGCAGGATTTGAACTATCTTGA 3450 0.4035 MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFVQRVWRRFKVTKAVALKLQQEWETSVNSYTGVMTANWISNNLLRPFLFFVTRFSNRYEKVRSKKIDSMRTCFTFLLESLQSSDSKRNFCFLAVGTAEERRIWSYQAQQLTSLGFSILSEYSECNSGAQDITTVTYLAMRILVMLTDLKGWKGITDDNRLDADLAVQGLVEFTGSKKSGSYVSIARYISALDNYSSQMKVITQADEKFVITASAITLAVRPFYLTNSDGERPDMLNVNHGAKQYIVYLMTIPWLVQHLPPVLLPALKHKSILFTCFQTLLILKENVLMDMSELVKSETLVSVKAIPPVGWSLANFICLATGNENNSVDSGSFNQGLDCALYVHVIVTLAENLLACLDNIEWVKKKKKSLQTDVESSTHESLIMSYMDQFRPVCQQWHLTSLLASVNRDTTNKAETSISNSLEYLGKLDLCDVALFYSNLLRIFSALSPIHGSLSVLNMLAFTPGFLLRLWGELEDSFFSGDKHMSDNHTSENGKHKAFEKIPKQSSKDGASKWVSVLNKFTGKSQSATDSSNPIGSHSAPSGVNLDPSDVWDIEPMRHGPQGIPKSMFATLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHGNGHHNRPLMDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPVAVATRTHEIFSANLRSDDSSSSMSVGSVITMTPHVFPFQERVEMFREFIKMDKASRKMAGEISEPGSRTIEIVVRRGHTVEDGFQQLNSLGSKLKSSIHVSFVSECGLTEAGLDYGGLSKEFLTDLSKEAFSPEYGLFSQTSTSDSLLIPTASARFLDNGLQMIEFLGRIVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYKNLMYVKNYDGDVKELCLDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQIFPFSNAFYRGLADLISPSWLKLFNASEFNQLLSGGNYDIDIDDFKSNTRYTGGYCEGSRTIKIFWEVIKGFEPKDRCKLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYKRPGTLRAKLLYAINSNAGFELS 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04395 1149 SUPERFAMILY Hect, E3 ligase catalytic domain 780 1142 IPR035983 GO:0004842
Trre13g04395 1149 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1149 IPR044611 GO:0000209|GO:0061630
Trre13g04395 1149 SMART hect_3 799 1149 IPR000569 GO:0004842
Trre13g04395 1149 ProSiteProfiles HECT domain profile. 805 1149 IPR000569 GO:0004842
Trre13g04395 1149 MobiDBLite consensus disorder prediction 569 589 - -
Trre13g04395 1149 Gene3D Hect, E3 ligase catalytic domain 1024 1148 - -
Trre13g04395 1149 FunFam E3 ubiquitin-protein ligase UPL7 1024 1148 - -
Trre13g04395 1149 CDD HECTc 781 1147 IPR000569 GO:0004842
Trre13g04395 1149 Gene3D Hect, E3 ligase catalytic domain 907 986 - -
Trre13g04395 1149 Gene3D Hect, E3 ligase catalytic domains 783 1021 - -
Trre13g04395 1149 FunFam Putative Ubiquitin-protein ligase E3C 907 986 - -
Trre13g04395 1149 Pfam HECT-domain (ubiquitin-transferase) 836 1149 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04395 Trre-Chr13 51536218 51544665 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04395 K10588 - gmx:100527169 1918.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04395 13 51536218 51544665 Trre13g04395 13 51536218 51544665 ECH