Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04378 ATGGCGAGCGGTAGTAGTAGTAGAAAATCTCGAAGACGAAGAAGATCTGATGACTCTGCTTCAGAGTCGGACTCCGACCACCGCCGGAAAACTAGTCGGCGGTCACGCCGGGATTCAGATGATTCCAGTGACGACGATGATAGAAGTGGAAGAAAGAAAAAGTCTTCCAGAACAATCACAGAAGAGGAAATTTCACAGTACATGGCTAAAAAAGCTCAGAGAAAGGCTACAAAAGTTGCAAAAAAATTGAAGACTAATACTGTATCTGGTTATTCCAATGACTCTAATCCATTTGGTGATTCTAATCTCAATGAAAAGTTTGTTTGGCGCAAGAAGATTGAGAGGGATGTTACTCAAGGTGCATCTATTGATTCCTTTTCAGTTAAGGCCGAGAAGAAAAGACAAGTAGAAAGGATGGCAGAAATTGAAAAGGTGAAAAAGAGGAGAGAGGAAAGGGCACTTGAGAAAGCACAACATGAAGAAGAAATGGCATTATTAGCTAGGGAACGTGCTCGAGCTGAGTTCCAGGACTGGGAAAAAAAGGAAGAGGAGTTCCATTTTGATCAAAGCAAAGTTAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCCAGGCCAATCGATGTCCTAACCAAGCACCTCAATGGATCTGATGATTTGGATATAGAAATAAATGAGCCATACATGGTCTTCAAGGGTTTGACTGTTAAAGAAATGAGTGAACTTCGTGACGATATCAAAATGCATCTGGATCTTGACAGGGCAACACCAACCCATGTGGAATATTGGGAGGCTCTCCTTGTGGTGTGCGATTGGGAGCTAGCTGAATCTCGAAAAAAGGATGCAATTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGTTGCTTGCTGAACAAAGGGGTCTACATTCGAGTGTTGAGCCAGATGTGAAGAACCTTTTACATCGAAAGACACGTACAGAGTTGGAAGACTTGCAGGCTCACATTGAGTCAGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACACCTTCACATATACAAGGCCAAGGCTTGTTTAAAGGAAATCCATGCTAAAATGTTACGTAAGCATTTGCAACGTCTTGAGCGACCATTGGAGGATGAAGATAAACCGGAGAGTTCTCAGGACATCATACCTGAGGAGGCAGATATTGAGGATGGTGCTGAAGTCCATTCTGCAGATGAATCATTTTCACCAGAGCCCATTAGAGAGATTCAAGAAGCTGAAGGCGAGGCTGGATCATTTTCACCACAACTGTTGCATGATGATGAAAACGAAGAAGCCATTGATCCTGAAGAGGACAAAGCTATACTGGAGCGGAAACGTATGGCTGTAATAGAAGAGCAGCAAAGACGAGTTCAGGAAGCATTGGCATCAAAGCCAGCTCCATCTGAAGAGAATTTAGAGATGAAAGCCTTTAAAGCTATGGGAGCTATGGAGGATGGAGATGCAGTGTTTGGATCTGGAGCTGAAGTGAGCCTCGATTCGCAGGTTTATTGGTGGCATGACAAGTACAGACCAAGGAAGCCAAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAACCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTACAAGGTTACAAATTTAATATTTTCTATCCTGATCTTGTAGACAAGATAAAAGCCCCAAACTACACTATTGACAAGGATGGCAGCAATGGGGAAACTTGCATTATAAGATTCCATGCAGGGCCACCATATGAAGATATAGCTTTTCGCATTGTAAACAAAGAATGGGAATATTCTCACAAGAAAGGTTTTAAATGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGTTACCGTCGATAA 1923 0.4301 MASGSSSRKSRRRRRSDDSASESDSDHRRKTSRRSRRDSDDSSDDDDRSGRKKKSSRTITEEEISQYMAKKAQRKATKVAKKLKTNTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGASIDSFSVKAEKKRQVERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMSELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAESRKKDAIDRARVRGEEPPAELLAEQRGLHSSVEPDVKNLLHRKTRTELEDLQAHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKMLRKHLQRLERPLEDEDKPESSQDIIPEEADIEDGAEVHSADESFSPEPIREIQEAEGEAGSFSPQLLHDDENEEAIDPEEDKAILERKRMAVIEEQQRRVQEALASKPAPSEENLEMKAFKAMGAMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPNYTIDKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04378 640 SMART CactinC_cactus_3 516 640 - -
Trre13g04378 640 MobiDBLite consensus disorder prediction 377 446 - -
Trre13g04378 640 Pfam Conserved mid region of cactin 168 365 IPR018816 -
Trre13g04378 640 MobiDBLite consensus disorder prediction 377 392 - -
Trre13g04378 640 MobiDBLite consensus disorder prediction 399 422 - -
Trre13g04378 640 MobiDBLite consensus disorder prediction 11 60 - -
Trre13g04378 640 MobiDBLite consensus disorder prediction 1 82 - -
Trre13g04378 640 Pfam Cactus-binding C-terminus of cactin protein 516 640 IPR019134 GO:0005515
Trre13g04378 640 Coils Coil 140 176 - -
Trre13g04378 640 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 39 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04378 Trre-Chr13 51397850 51411571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04378 K25058 - gmx:100780087 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04378 13 51397850 51411571 Trre13g04378 13 51397850 51411571 ECH