Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04372 ATGTTTCGATTCTGGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCATCACAGTCATGGTATCCACCATCTGTGATGAGTTCATCGAGTTCTTCAAGGCCTGCTACACCTGCTTCATCTTCCGGTTCGCCGAGACCTTCGATTACTCATGTTCCTCCGGCAGAAGCTGCCGGAACTATTGCTTCTTTGAAGGACAAGAGTGTTGATGAGTTAAGGAAGCTTTTATCTGATAAAGATGCGTATCAACAGTTTCTAAATTCACTTGACCAGGTCAAGATTCAAACCAATCTGAAAGATGAACTTTCCAAGGAGAATTTGCAGCTTGCAGAGGAGAATCTACAAAAGGAACCACGTATGATGGAACTTAGGAATCAATGTAGAATAATCCGGACAACCGAATTAGCTACTGCTAATGAGAAACTAAATGAGCTTGAGAAGCAGAAAGATGAAATGTTGAAGTTAAATTCCCCTGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAACCAGACAGATGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGACAGAGAGATTGACCTGGCAGCATTTTTGCAGAAATACAAGAAGCTACGCACCACTTACCACAAGAAAACTCTTATACATCTTGCTGCTAAAACATCAAATATATGA 660 0.4182 MFRFWGSQEQQSQDGSSSQSWYPPSVMSSSSSSRPATPASSSGSPRPSITHVPPAEAAGTIASLKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQTNLKDELSKENLQLAEENLQKEPRMMELRNQCRIIRTTELATANEKLNELEKQKDEMLKLNSPASLLQRIQESVNQTDEESENLHQQLLDREIDLAAFLQKYKKLRTTYHKKTLIHLAAKTSNI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04372 219 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 143 212 - -
Trre13g04372 219 ProSiteProfiles VPS37 C-terminal domain profile. 139 219 IPR009851 -
Trre13g04372 219 Pfam Modifier of rudimentary (Mod(r)) protein 65 209 IPR009851 -
Trre13g04372 219 Coils Coil 135 155 - -
Trre13g04372 219 Coils Coil 162 182 - -
Trre13g04372 219 MobiDBLite consensus disorder prediction 1 48 - -
Trre13g04372 219 Gene3D Helix hairpin bin 143 212 IPR029012 -
Trre13g04372 219 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 11 217 - -
Trre13g04372 219 MobiDBLite consensus disorder prediction 1 55 - -
Trre13g04372 219 SUPERFAMILY Endosomal sorting complex assembly domain 158 207 IPR037202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04372 Trre-Chr13 51362679 51366577 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04372 K12185 - gmx:100305851 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04372 13 51362679 51366577 Trre13g04372 13 51362679 51366577 ECH