Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04318 ATGAATTTTCCCTTCGACGATTGGCCCTACAACGACAACAATATTCCCTCCGAACTGCGCAACTTCAACGAAAACGAAATTCCAATCAGAGAAGATCTCATGGCTGCCGGAGCAGATCGTCGATTCATCAGTTTAGTATTTGATGGACACTCCGGCAACGAAGACAGCGACGAAGAAGAAGATGGAGAGGAAGAAGAAACAGATGAAGAAGACGAAGACGATGAAGAGTATGTTCCCGATGTACCGCCGGCGTCTAGGGTTTCTCACGAACCTCCTCGGAATCCTATATCCGACGAAGTAATTGTTATTCCCGACGATGAACGACAAAATTCAATTGAAGATGAGAGAAATAAACGCCGCAGAACCGAAGCAGGAGAAGCTTCGTGTTCTTCGATTCCAATCGAAAGCGCCGAATGTAGTCAAGATAATGACTTCCGTACCGACATTGACGGCCTTATTTGCCCTATTTGTATGGACGCCTGGACCGATGACGGGGATCATCATGTCTGTTGTCTTCCTTGTGGACATATTTATGGCATGTCTTGCCTAAAAAAGTGGCTTCAACAACGAAAAAATCCGGGGAAGTGTCCTCAATGTAATATGAGATGTTCAATGAAGGATGTGAGGAAACTCTATGCTTCTCGAATAGTTGCTGTTGATGATGAATCCCATAAGCGAATTCGGTCACTTGAGAGCAAATGTGCGTCTCTTGAGAGTAAGGATGGTAGTTGGCGCAAGAAAGAAACAGCATGGAAGAAGAAAGAGGCTGCACTGCATCTTGATGTTCAGAAACTTACGAAGCGGGTACAAGATATGCAGAGTAGACAATCTGAATTAATGGTTGCCGGTGGGAACTCTCAATGGAGATATGAATCTGAGCGCAACTATAACCCAATGTCCCATGGAAAAGGATCTTTTTGCAATTTTGAACGTCAGAAAACATTTCACGTAGAAGGTGCTCGTGTGTTTGATATGGACACTTCTAATCAAATTTTATTAATCGCGCGAAAGGAAAAAGCAATGGGTGATGTGCACTTGCTAACTAAAATGAGCTTGATATCTCCATTTGAGATGCAAGATATTGTACTACCATCATCTTCAAATGGTATTAGAGACTTGCATATTTCTCCTTTTGATAGTAAACTGGCCCTCTATGCATCATTTGGGAAGACATTATCAGTGGTCAGCCTCGACAGCGGCACCCCTGTTCTCAATTATGATCTTCAGGTTCCAGCTTGGTCCTGTACATGGGATCACATCAGTACACATAACATATATGCTGGACTGCAGAATGGTTCTGTCCTGGTGTTTGACATGAGACAAACTTCAGGACCCTTAAAATCTTTAGCTGGGTTGACTAGCAACCCTATTCATAGTTTGCAGTCTCTTGCACAAACGAGTCTCCCTTCTGGTGCCAGAACCATCCTAGCCGCATCTGCTATTGGCCCTTGTCAGTGGGACATTGATTCTGAAGAACGGCCGTTTATGGTTCCTGGGACCGATAATCAAGGAGTTTGTATATCCCTTGCCTATTGTCCGAGCAGCGATGACATTGTTGTTTCATACCGTCCAAAGTTCAACATGTCAATGGATGTGCCTCTTTCTCCACCATCGCCCACTCCTTCTCATGTTACTGGACAAGGAGTACAGGGCTCTAATGTATTGTTAAAGAGAATGGGTGGTAATGATTTCCAAAAGATGGGTTCCTCGTATGCCAATGTAAGTAAAATCCGACTACCAAAATCTGTAATTATAGACATAGAGAATCAGAATAGAATGTTTGCATCTAGAGATGAAGTTACATGTGACTTGGTCTTGCAAGAGTTGCCATCTTTTAGAGTTATTCAGCGGTTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTATTCACCTAGTCATGGAATGCTTGGCTGCTTAAGTGAGAATGTATTGCAACTTTTCCGTACCAATTTCTCATGA 1959 0.4329 MNFPFDDWPYNDNNIPSELRNFNENEIPIREDLMAAGADRRFISLVFDGHSGNEDSDEEEDGEEEETDEEDEDDEEYVPDVPPASRVSHEPPRNPISDEVIVIPDDERQNSIEDERNKRRRTEAGEASCSSIPIESAECSQDNDFRTDIDGLICPICMDAWTDDGDHHVCCLPCGHIYGMSCLKKWLQQRKNPGKCPQCNMRCSMKDVRKLYASRIVAVDDESHKRIRSLESKCASLESKDGSWRKKETAWKKKEAALHLDVQKLTKRVQDMQSRQSELMVAGGNSQWRYESERNYNPMSHGKGSFCNFERQKTFHVEGARVFDMDTSNQILLIARKEKAMGDVHLLTKMSLISPFEMQDIVLPSSSNGIRDLHISPFDSKLALYASFGKTLSVVSLDSGTPVLNYDLQVPAWSCTWDHISTHNIYAGLQNGSVLVFDMRQTSGPLKSLAGLTSNPIHSLQSLAQTSLPSGARTILAASAIGPCQWDIDSEERPFMVPGTDNQGVCISLAYCPSSDDIVVSYRPKFNMSMDVPLSPPSPTPSHVTGQGVQGSNVLLKRMGGNDFQKMGSSYANVSKIRLPKSVIIDIENQNRMFASRDEVTCDLVLQELPSFRVIQRFKMPAQARDIRYSPSHGMLGCLSENVLQLFRTNFS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04318 652 Gene3D - 311 552 IPR015943 GO:0005515
Trre13g04318 652 ProSiteProfiles Zinc finger RING-type profile. 154 200 IPR001841 -
Trre13g04318 652 PANTHER RFWD3 PROTEIN 54 651 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Trre13g04318 652 SUPERFAMILY WD40 repeat-like 362 647 IPR036322 GO:0005515
Trre13g04318 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 273 IPR013083 -
Trre13g04318 652 SMART ring_2 154 199 IPR001841 -
Trre13g04318 652 MobiDBLite consensus disorder prediction 53 78 - -
Trre13g04318 652 Pfam Ring finger domain 154 200 IPR001841 -
Trre13g04318 652 CDD mRING-C3HGC3_RFWD3 150 212 - -
Trre13g04318 652 SUPERFAMILY RING/U-box 149 206 - -
Trre13g04318 652 MobiDBLite consensus disorder prediction 100 125 - -
Trre13g04318 652 MobiDBLite consensus disorder prediction 48 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04318 Trre-Chr13 50842027 50846426 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04318 K15691 - gmx:100818898 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04318 13 50842027 50846426 Trre13g04318 13 50842027 50846426 ECH