Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04308 ATGCACATTTATGAAAACAGGACAGACAAGGACCACCACACATTTGAGATGGAAACCTTCCTCTTCACCTCAGAATCTGTAAACGAAGGTCACCCCGATAAGCTGTGTGATCAGGTTTCAGATGCCATCCTTGATGCATGTTTAGAGCAAGACCCAGAAAGTAAGGTGGCCTGTGAGACATGTACAAAGACTAACATGGTTATGGTCTTTGGTGAGATCACAACCCAAGCTAAGGTGGACTATGAGAAGATAGTTAGAGACACTTGTAGAGGAATTGGATTTGTATCAGCTGACGTCGGTCTTGACGCTGATCACTGCAAAGTTCTTGTCAACATTGAGCAACAGAGTCCTGATATTGCTCAGGGAGTTCATGGTCACTTGACCAAAAAACCAGAGGAAATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTAATGCCACTCACTCATGTGCTTGCTACTAAACTTGGTGCAAAGCTCACTGAAGTCAGAAAGAACAAAACATGCGCTTGGCTTAGACCTGATGGTAAAACCCAAGTGACAGTTGAGTATCAGAATGATAATGGAGCCATGGTTCCAATCCGTGTGCACACTGTCCTCATCTCAACTCAGCATGACGAAACTGTCACAAATGAACAAATTGCTGCAGATTTAAAAGAGCACGTGATAAAACCTGTTATCCCAGCTAAATACCTTGATGACAAGACTATTTTTCACCTCAATCCCTCTGGTCGGTTTGTGATTGGTGGACCACATGGAGATGCAGGACTTACTGGCAGGAAGATCATTATTGACACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTTGACAGAAGTGGTGCATATATTGTTAGGCAAGCAGCCAAAAGTGTGGTAGCTTCAGGGCTCGCAAGACGTTGTATTGTGCAAGTTTCTTATGCAATTGGAGTCCCAGAGCCACTTTCTGTATTTGTTGACACATACAAAACAGGAAAGATTCCAGACAAAGACATCTTGGTTCTAATTAAGGAGAGTTTTGACTTCAGGCCAGGAATGATTTCCAACAACCTTGACCTCAAAAGAGGTGGAAACTTCAGGTACCAAAAGACCGCTGCTTATGGCCATTTTGGACGTGATGATGCTGATTTCACCTGGGAGACTGTCAAGATACTCAAGCCCAAGGCTTGA 1221 0.448 MHIYENRTDKDHHTFEMETFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTQAKVDYEKIVRDTCRGIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYQNDNGAMVPIRVHTVLISTQHDETVTNEQIAADLKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKESFDFRPGMISNNLDLKRGGNFRYQKTAAYGHFGRDDADFTWETVKILKPKA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04308 406 Gene3D - 133 397 - -
Trre13g04308 406 Pfam S-adenosylmethionine synthetase, central domain 133 254 IPR022629 GO:0004478|GO:0006556
Trre13g04308 406 Gene3D - 27 295 - -
Trre13g04308 406 SUPERFAMILY S-adenosylmethionine synthetase 19 125 IPR022636 GO:0004478|GO:0006556
Trre13g04308 406 Hamap S-adenosylmethionine synthase [metK]. 18 406 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04308 406 ProSitePatterns S-adenosylmethionine synthase signature 1. 135 145 IPR022631 GO:0004478|GO:0006556
Trre13g04308 406 PIRSF MAT 14 406 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04308 406 CDD S-AdoMet_synt 21 400 - -
Trre13g04308 406 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 17 405 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04308 406 FunFam S-adenosylmethionine synthase 27 143 - -
Trre13g04308 406 ProSitePatterns S-adenosylmethionine synthase signature 2. 282 290 IPR022631 GO:0004478|GO:0006556
Trre13g04308 406 Gene3D - 20 258 - -
Trre13g04308 406 Pfam S-adenosylmethionine synthetase, N-terminal domain 20 117 IPR022628 GO:0004478|GO:0006556
Trre13g04308 406 SUPERFAMILY S-adenosylmethionine synthetase 131 255 IPR022636 GO:0004478|GO:0006556
Trre13g04308 406 NCBIfam methionine adenosyltransferase 21 403 IPR002133 GO:0004478|GO:0005524|GO:0006556
Trre13g04308 406 SUPERFAMILY S-adenosylmethionine synthetase 256 402 IPR022636 GO:0004478|GO:0006556
Trre13g04308 406 Pfam S-adenosylmethionine synthetase, C-terminal domain 256 397 IPR022630 GO:0004478|GO:0006556
Trre13g04308 406 FunFam S-adenosylmethionine synthase 150 257 - -
Trre13g04308 406 FunFam S-adenosylmethionine synthase 278 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04308 Trre-Chr13 50731710 50734473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04308 K00789 - csin:114296156 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04308 13 50731710 50734473 Trre13g04308 13 50731710 50734473 ECH
Trre13g04308 13 50731710 50734473 Trre1g02539 1 20679442 20680614 PCT