LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04302	ATGCCTGCAACTCCATTTTCATGTTCGTTCTTCGTCTCACAACCGCGCTTCAATTACTACATTACCCCTATCTTCCGTTCACTAACCTACAAACTCTCTTCTTCACCGTTCCAATTCAATGCCAAATCCTCCACCGTCAGATTCCACTGTGCACTCTCCCAAGCCGCGGAGACAGAATCTCCATCCGGCGGCCGCTCTGGTGCGTTAACTCCTACTCCTCCGGTCACCGGAGAAGTTCAGAAAATCGACGTCAATCCTCCCAAAGGTACACGTGACTTTCCGCCTGAAGAAATGCGATTGCGTAACTGGCTATTCAACAATTTCAAAGAGGTGTCGCGGTTGTATGGATTTGAGGAGATTGATTTTCCTGTTCTTGAGTCAGAAGCATTGTATACTAGGAAAGCAGGGGAAGAGATTAAGGACCAGCTTTACTGTTTTGAAGATCGGGGTAATCGCCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGGAAGTCCGTATCACTACCATTGAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAGTGGAATATGGATATCATTGGTGTTCCCGGGGTTATGGCTGAAGCAGAGCTTATATCTTCCATTGTTACTTTCTTCAAACGAATAGGAATTACAGAATCTGACGTTGGATTTAAGGTTTCTAGTCGAAAGGTTCTACAAGAAGTATTGAAGTGTTATTCAATACCTGAAAATATGTTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTTGACGAGATAAAGAAAGAGTTGAAAACTGTTGGTCTATCGCAGGAGGCTATCCAGGAGCTATTGCAAGTCCTTTCTGTAAAGTCATTGACCGAGTTAGAAGAGAGGCTCGGAGGTAGTGGAGAAGCAATTGCTGATCTCAAACAGCTATTCTCACTGGCTGAAAAGTTTCGTTACTCCAAATGGCTTCAATTTGACGCATCAGTTGTTCGTGGCCTTGCTTATTACACTGGCATTGTATTTGAGGGTTTTGACCGAGAAGGAAAGCTCCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACCTTTGGTGCTGATGACATTCCTGCTTGTGGTTTTGGTTTTGGCGATGCAGTCATAGTCGAATTGCTCAGGGAGAAGGGTCTTCTACCAGAGCTCAGCTTGCAAGTACATAACATTGTTTGTGCCTTGGATGAAGAACTTCAAGGGTATGCTGCTTTGGCTGCTAACATTCTCAGAGAAAAAGGACAGAGTGTTGACTTGGTATTGGAAAGCAAACCACTTAAATGGGTGTTTAAACGTGCAGCCAGAACAAATGCTGAGCGTCTGGTATTAGTAGGAAATTCTGAGTGGCAAAAGGGTATGGTACGTGTCAAAGTTCTATCCACTGGTGAACAGTATGAGGTTAAACTAGATGATCTAAATTAA	1506	0.4429	MPATPFSCSFFVSQPRFNYYITPIFRSLTYKLSSSPFQFNAKSSTVRFHCALSQAAETESPSGGRSGALTPTPPVTGEVQKIDVNPPKGTRDFPPEEMRLRNWLFNNFKEVSRLYGFEEIDFPVLESEALYTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTFFKRIGITESDVGFKVSSRKVLQEVLKCYSIPENMFGKVCVIIDKIEKIPVDEIKKELKTVGLSQEAIQELLQVLSVKSLTELEERLGGSGEAIADLKQLFSLAEKFRYSKWLQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDIPACGFGFGDAVIVELLREKGLLPELSLQVHNIVCALDEELQGYAALAANILREKGQSVDLVLESKPLKWVFKRAARTNAERLVLVGNSEWQKGMVRVKVLSTGEQYEVKLDDLN	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04302	501	PIRSF	His-tRNA_synth	80	501	IPR004516	GO:0005737
	Trre13g04302	501	Gene3D	Bira Bifunctional Protein; Domain 2	80	407	IPR045864	-
	Trre13g04302	501	PANTHER	HISTIDYL-TRNA SYNTHETASE	81	500	IPR004516	GO:0005737
	Trre13g04302	501	MobiDBLite	consensus disorder prediction	57	93	-	-
	Trre13g04302	501	Pfam	Histidyl-tRNA synthetase	89	393	IPR041715	-
	Trre13g04302	501	FunFam	Histidine--tRNA ligase chloroplastic/mitochondrial	409	501	-	-
	Trre13g04302	501	Hamap	Histidine--tRNA ligase [hisS].	82	501	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Trre13g04302	501	SUPERFAMILY	Class II aaRS and biotin synthetases	86	407	IPR045864	-
	Trre13g04302	501	Pfam	Anticodon binding domain	420	500	IPR004154	-
	Trre13g04302	501	CDD	HisRS-like_core	97	403	IPR041715	-
	Trre13g04302	501	ProSiteProfiles	Aminoacyl-transfer RNA synthetases class-II family profile.	89	410	IPR006195	-
	Trre13g04302	501	NCBIfam	histidine--tRNA ligase	86	496	IPR015807	GO:0004821\|GO:0005524\|GO:0006427
	Trre13g04302	501	SUPERFAMILY	Class II aaRS ABD-related	418	500	-	-
	Trre13g04302	501	Gene3D	-	409	501	IPR036621	-
	Trre13g04302	501	FunFam	Histidine--tRNA ligase chloroplastic/mitochondrial	80	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04302	Trre-Chr13	50621791	50629912	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04302	K01892		-	gmx:100793186	883.634

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04302	13	50621791	50629912	Trre13g04302	13	50621791	50629912	ECH