Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04298 ATGGTTCAGAAAGAAGATGTTGATAACAAAAACGACGCTCTCCCCTCTGCCGTTTTCAAATTAGACTTGCATTGCGCAGGATGCGTCAAGAAAATCAAACGCGCCGTTCTCCATTTCGATGGTGTGGAAGATGTTAAGGTCGATATGGCTGGTAACAAAGTGACGGTTATCGGAAAGGTGGATTCTAACAAAGTTCGTGATAAATTGGAGGAAAAAATTAAGAAGAAGGTTGAGATCGTCTCGTCTCCGCCGAAAAAAGATGTCGCCGCCGATAAACCACAGCCGGAGAAGAAGAAACAGGAGGAGGAGGAGAAGAAGAATGAGCCTAACAACAAAAAACCTGTCGATGTAAAAAAAACAGAGGAAAAATCTCCCAAACAGTCGGTTCAAAACACGGTGGTTTTGAAAATTAAATTACACTGTGACGGATGTATTCAAAAAATTGAAAAGATTATCCTCAAAATCAAAGGAGTTGAATCAGTGAATATTGATGGAGCAAAAGATTTGGTGACGATAAATGGAATCATTGACTCGAAGGAAATTGCATCTTATTTAACGGAAAAGTTTAAAAGAACCGTCGAAATAGTTCAACCAAAGAAAGAAGATGGTAAAAATAAAGAGAAAGATGAAGGTAAACAAAAATCAAAAGAAAATCAAGGTGGTGAAAAAATAGAAGAAGTTGCAACAAAAGTGGAGGTTAATAAAATGGAGCATTATGGTTATGGACACCAACAACCTATGTATTGGTACGATGGATATGAACCGGGTCAAAGTAGCAACCATGCGGTGGAGGTTCAACAAGGGTATTCTAATCAACAAGGGTATTATGGTAATCATGTGAATCAACAAGGGTATAATAGTAATTATAATTATAATAATCATGCGAATGAACAAGGGTATGGTTATAATGAACATGAACAAGGATATGGTTATAATCATGTGAATAGAGGTGAAGGTGGATATATGGTAGAGCCTCAACAACCTCCATTTTATATGCATCCAAATAATCCTCCTCCACAAATGTTTAGTGATGAAAACCCCAATGCTTGTTCCTTAATGTGA 1062 0.3738 MVQKEDVDNKNDALPSAVFKLDLHCAGCVKKIKRAVLHFDGVEDVKVDMAGNKVTVIGKVDSNKVRDKLEEKIKKKVEIVSSPPKKDVAADKPQPEKKKQEEEEKKNEPNNKKPVDVKKTEEKSPKQSVQNTVVLKIKLHCDGCIQKIEKIILKIKGVESVNIDGAKDLVTINGIIDSKEIASYLTEKFKRTVEIVQPKKEDGKNKEKDEGKQKSKENQGGEKIEEVATKVEVNKMEHYGYGHQQPMYWYDGYEPGQSSNHAVEVQQGYSNQQGYYGNHVNQQGYNSNYNYNNHANEQGYGYNEHEQGYGYNHVNRGEGGYMVEPQQPPFYMHPNNPPPQMFSDENPNACSLM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04298 353 Gene3D - 12 79 - -
Trre13g04298 353 SUPERFAMILY HMA, heavy metal-associated domain 19 71 IPR036163 GO:0046872
Trre13g04298 353 CDD HMA 23 75 IPR006121 GO:0046872
Trre13g04298 353 ProSiteProfiles Heavy-metal-associated domain profile. 14 81 IPR006121 GO:0046872
Trre13g04298 353 Pfam Heavy-metal-associated domain 136 194 IPR006121 GO:0046872
Trre13g04298 353 Pfam Heavy-metal-associated domain 19 75 IPR006121 GO:0046872
Trre13g04298 353 MobiDBLite consensus disorder prediction 89 125 - -
Trre13g04298 353 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 9 353 IPR044594 GO:0046872
Trre13g04298 353 SUPERFAMILY HMA, heavy metal-associated domain 130 187 IPR036163 GO:0046872
Trre13g04298 353 ProSiteProfiles Heavy-metal-associated domain profile. 130 201 IPR006121 GO:0046872
Trre13g04298 353 MobiDBLite consensus disorder prediction 200 224 - -
Trre13g04298 353 Gene3D - 127 202 - -
Trre13g04298 353 MobiDBLite consensus disorder prediction 81 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04298 Trre-Chr13 50608757 50610626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04298 - - lja:Lj1g3v4591190.1 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04298 13 50608757 50610626 Trre13g04298 13 50608757 50610626 ECH