LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04272	ATGGAAGCAGAGACATTGAGTTCTGAACAGGTGAAGAATAAAATGGAGGCAAACAGATTGAGTACTGATCACTCTCCTGGCTTTCTTAGCCGAGCACTTCCAGCTGTTATACCAGTGCTTTTGATTTCGATAGGATATGTTGACCCTGGTAAGTGGGTTGCAAGTGTTGAAGGTGGTGCAAGGTTTGGTTTTGATCTGGTGGCTTTCACGCTTATTTTCAATTTGGCTGCTATCTTCTGCCAGTACTTATCTGCAAGGGTTGCTGTAATCAGTGGAAGAGATCTTGCTCAGATTTGTAGTGATGAGTATGATACATGGACATGCCTTCTCCTAGGAATTCAAATGGAACTTTCAGTGATTATGCTAGATCTTAACATGATCTTGGGCATGGCACAAGGATTAAATCTTATTTTTGGGTGGGACTTGTTCACCTGTGTCTTTTTCACCGCCACTGGTGCTGTTTTTCATATACTTCTTGCTGTCCTCCTTGACATTGAAAAGGCAAAATTCCTAGGACAGTTTGTGGCAGGCTTTGTATTACTTTCTTTTATACTTGGACTACTCATCAATCAATCAGAAATTCCACTTCCCATGAATGGAATACTAACGAAGTTGAGTGGGGAGAGTGCATTTATGCTGATGAGTCTTCTTGGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATAAGGGACCGAAAAACATTTCTAAAGATGCATTGTGTCATAACCATTTTTTGGCCATCTTATGTGTCTTCAGTGGCCTTTATTTGGCAAATAATATGCTGATGACCACCTCAGCAAATGAGTTCTATAGTACAGGTCCTGTTTTGCTTACTCTTCAGGATGCGCTGTCACCAATGGAACAGGTGTTGCGCAGCCCAATAGCTCTGCTTGGTTTTGTACTCATTTTGTTTCTTGCAAACCAAACTACTGCTTTGACTTGGAGTTTAGGCGGAGAAGTAGTAGTTAATGGTTTCTTAAAATTGGACATTCCAGGTTGGCTTCACTATTCGACAATTAGAGTGATTGCTGTGCTGCCCGCCCTTTATTGTGTCTGGAGTTCAGGAGCAGAAGGGATGTATCAGCTACTTATATTCACTCAGGTTTTAGTAGCTCTGCAACTTCCATCTTCCGTGATTCCCCTTTTCCGAGTTGCTATGTCTAGATCAATCATGGGCGCACACAAGATTTCCCAGCCGGTGGAACTTTTGGCATTGGTCATATTCATCGGGATGCTTGGCTTGAATATCATCTTTTTGGTAGAAATGATATTTGGCAATAGTGATTGGGCAGCTGATTTGAGATGGAATGCGGGAAATGGCGTGTCTGGCTCGTATTCCATTCTTCTCATTGCTGGTTTAATATCACTATGTCTGATGCTGTGGTTAGCTGCCACGCCTTTAAGATCTTCCAATATTCAATTAGATGGTCAGGTGTTGAACTGGGATATGCCAGAGACTATACCGAATCCGCGGGTTGATGGTGAAGAATCATATATAACTGAAACAGTGTGTCTTGAAGATGCTTCTGTTGAAGCTGATGAACCAAAACCAGCTCTGGCAAGGACATTAGAGTACCCAGAAGTATCACTCACAAGTTGTCGTCCTGATTTACCTGAAACCATAATGGAACATGATCTCCAGGTGAATGCTTTATTGGAGAATTGTTCTGTTACACCATCAGTTTCCACTTCAGAGTCAGGGGCTGTATCAACTGTGGTTAATGATAATTCCGATTCTAGATTTGAAGACCCAAAACCTATAATGGAAACGAATGCCCCAGTTGAGAAGAATGTGGAAATTGATGATTATTCAAACGCTGAAAGGGATGATGATGATGGAGACTCTTGGGAAACCGAAGAATCATCCAAAGTAGTCTTGGCAAATCCCCCATCATCAACATCAGAAGGCCCTCCATCATTCAGGAGTATTAGTGGGAAAAGTGATGATGGTGGGGGTAGCTTCGGAAGTCTATCAAGAATAGAAGGATTAGGACGTGCTGCAAGGCGTCAGCTAGCTGCTATTCTTGATGAATTCTGGGGACAGCTTTATGATTTCCATGGGCAAGCAACCCAAGAAGCTAAGGCTAAGAAAATTGATGTTTTGCTGGGGCAGGGAGTAGATTCAAGACCCACTGCATCCTTGCAGAAAATGGATGCATCTGGACAGGACTATTCCGAATACTTGGTATCTGAAGGTGGTAGAGCTTCCGACACTTCAATCAACGCCGGTCCATATGACTATTCCAAGCAGTCTTCATATGGTCTTCAAAGGAGTTCTTCCTCCGTGCGGACAAATCCCATGCAGTTATTGGATGCATATGCACAAAATTCTAGCCGGAATTTCATTGATTCTGGTGAGAGGCGCTATTCTAGTGTTCGCAATCTTCATTCATCCGACGCTTGGGATTATCAGCCAGCTACAATACATGGTTACCAGACTGCATCCTATCTTAGCCGGGGTGTGAAAGATAGAAATTCTGAAAACATAAATGGTTCAATGCCGTTGTCATCGCTGAAGTCCCCTTCCATAGGTAATCCAAACTACAGGGATTCCCTTGCATTTGCTTTGGGGAAAAAGTTGCATAATGGCTCAGGTGTAGGCCTGCCCCCTGGATTCGAAAATGTAGCTGTCTCTCGAAATCGCCAACTACAATCTGAGAGGTCCAATTATGATTCTTGCTCCTCTGGACCTTCAGCTAATACAGTCAATTCAGTGAACACTAAGAAGTACCACAGCTTGCCTGACATTTCAGGATACTCCATCCCCCACAGAGCTGGCTATGTGTCTGATAAAAATGCACCATGGGATGGTTCTGTTGGATATGGTTCTTTTGCTGGTAGGACGGGTTATGAACCATCTTTATATCCAAATTCTGGATCAAGAACAGGAGCTCATTTGGCCTTTGATGAAGTGTCTCCATCTAAAGTGTACAGAGAGGCACTCTCTTCACAGCTGAGTTCTGGTTTTGACACTGGATCCCTCTGGTCTAGACAGCCTTTTGAGCAGTTTGGTGTTGCTGATAAAATCCATAATGTTGCAATGGAAGGTGCAGGAGGAAGGCCTAATGCAATTGTTCAAGAAACTTCACTTGAGGTTGTAGAGGGGAAACTTCTTCAGTCTGTTAGACTTTGCATTATGAAGCTCTTAAAACTTGAGGGATCTGATTGGTTGTTTAAACAGAATGATGGAATTGATGAGGATCTGATTGATCGTGTAGCAGCAAGGGAAAAGTTTGTTTATGAAATTGAAGCTAGGGAGACAAATCAGGGCATTCATTTGGGTGATACTCGCTATTTTATTTCTGATAGGAAACCTGTTTCGGTTTCCTCAGTTCCTACCTGTGGAGAGGGATGTGTGTGGAGAACAGATTTAATAATAAGCTTTGGGGTCTGGTGTATCCACCGTATTCTTGACCTCTCAGTTTTGGAAAGCCGGCCAGAGCTTTGGGGGAAATACACCTATGTGCTCAACCGTCTCCAGGGCATCATCGAACCAGCTTTTTCAAAGCCCCGTACTCCATCGGCCCCGTGTTTTTGCCTTCAAGTTCCCACTTCACACCAGCATAAGTCAAGCCCTCCTCTTTCTAATGGGATGCTACCCCCAACTGTGAAAGCTGGCCGGGGCAAATGCACTACTGCATCCGCGTTGCTTGAGCTGATTAAAGATGTGGAGATTGCCATCTCTAGCAGGAAAGGACGTACAGGAACTGCAGCTGGTGATGTGGCTTTTCCAAAGGGGAAGGAAAATTTGGCGTCTGTTCTCAAACGGTACAAGCGAAGGTTATCATCCAACAAGCTCGTTGGCAATCAGGACGGAACTGGTTCTCGCAAGGTCGCATCATCAGGATCATACAACCAATAA	3885	0.4373	MEAETLSSEQVKNKMEANRLSTDHSPGFLSRALPAVIPVLLISIGYVDPGKWVASVEGGARFGFDLVAFTLIFNLAAIFCQYLSARVAVISGRDLAQICSDEYDTWTCLLLGIQMELSVIMLDLNMILGMAQGLNLIFGWDLFTCVFFTATGAVFHILLAVLLDIEKAKFLGQFVAGFVLLSFILGLLINQSEIPLPMNGILTKLSGESAFMLMSLLGATLVPHNFYLHSSIVQWHKGPKNISKDALCHNHFLAILCVFSGLYLANNMLMTTSANEFYSTGPVLLTLQDALSPMEQVLRSPIALLGFVLILFLANQTTALTWSLGGEVVVNGFLKLDIPGWLHYSTIRVIAVLPALYCVWSSGAEGMYQLLIFTQVLVALQLPSSVIPLFRVAMSRSIMGAHKISQPVELLALVIFIGMLGLNIIFLVEMIFGNSDWAADLRWNAGNGVSGSYSILLIAGLISLCLMLWLAATPLRSSNIQLDGQVLNWDMPETIPNPRVDGEESYITETVCLEDASVEADEPKPALARTLEYPEVSLTSCRPDLPETIMEHDLQVNALLENCSVTPSVSTSESGAVSTVVNDNSDSRFEDPKPIMETNAPVEKNVEIDDYSNAERDDDDGDSWETEESSKVVLANPPSSTSEGPPSFRSISGKSDDGGGSFGSLSRIEGLGRAARRQLAAILDEFWGQLYDFHGQATQEAKAKKIDVLLGQGVDSRPTASLQKMDASGQDYSEYLVSEGGRASDTSINAGPYDYSKQSSYGLQRSSSSVRTNPMQLLDAYAQNSSRNFIDSGERRYSSVRNLHSSDAWDYQPATIHGYQTASYLSRGVKDRNSENINGSMPLSSLKSPSIGNPNYRDSLAFALGKKLHNGSGVGLPPGFENVAVSRNRQLQSERSNYDSCSSGPSANTVNSVNTKKYHSLPDISGYSIPHRAGYVSDKNAPWDGSVGYGSFAGRTGYEPSLYPNSGSRTGAHLAFDEVSPSKVYREALSSQLSSGFDTGSLWSRQPFEQFGVADKIHNVAMEGAGGRPNAIVQETSLEVVEGKLLQSVRLCIMKLLKLEGSDWLFKQNDGIDEDLIDRVAAREKFVYEIEARETNQGIHLGDTRYFISDRKPVSVSSVPTCGEGCVWRTDLIISFGVWCIHRILDLSVLESRPELWGKYTYVLNRLQGIIEPAFSKPRTPSAPCFCLQVPTSHQHKSSPPLSNGMLPPTVKAGRGKCTTASALLELIKDVEIAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSSNKLVGNQDGTGSRKVASSGSYNQ	1294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04272	1294	PRINTS	Natural resistance-associated macrophage protein signature	343	360	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	PRINTS	Natural resistance-associated macrophage protein signature	375	394	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	PRINTS	Natural resistance-associated macrophage protein signature	315	334	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	PRINTS	Natural resistance-associated macrophage protein signature	213	236	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	PRINTS	Natural resistance-associated macrophage protein signature	111	137	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	Pfam	Natural resistance-associated macrophage protein	52	405	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	24	472	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Trre13g04272	1294	MobiDBLite	consensus disorder prediction	567	585	-	-
	Trre13g04272	1294	MobiDBLite	consensus disorder prediction	567	661	-	-
	Trre13g04272	1294	PIRSF	EIN2	6	1293	IPR017187	GO:0009873
	Trre13g04272	1294	MobiDBLite	consensus disorder prediction	1272	1294	-	-
	Trre13g04272	1294	MobiDBLite	consensus disorder prediction	629	649	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04272	Trre-Chr13	50323863	50330183	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g04272	15	1291	Miscellaneous Gene Families	AT5G03280	52.799	0.0	1233

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04272	K14513		-	gmx:100813034	1867.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04272	13	50323863	50330183	Trre13g04272	13	50323863	50330183	ECH