Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04261 ATGATGAATACGGCGAACGGTAACATGACGACGCCGTCTTCTTCTTCTTCCGGTGGTGGTGGTGGTGGTGGTACTACACAGTCACAAGGTCTCAAAACCTATTTCAAAACCCCTGAAGGAAAATATAAACTTCAATTCGAGAAAACTCATCCTGCTGGTCTTCTTCAATTCAATCATGGCAAAACCGTTTCTCTGGTAACCCTAGCACATCTTAAGGAGAAGGCAGCGCCTTCAACTCCAACTGCGTCGTCTTCGAGTTTTAGTGCCAGCAGTGGAGTACGGTCAGCTGCGGCTAGATTGTTAGGAGGAGGAAGCAATGGAAGTAGGGCGCTTAGTTTTGTTGGTGGAAATGGTAGTAGTAAAAGCAATGGAGGGACTGCTAGGATTGGTTCGATTGGTGCTTCGAGTTTGAGTAGTTCGGTGGCTAATCCAAATTTTGATGGGAAAGGATCTTACTTGATTTTCAATGCTGGGGATGCGATTTTGATAAGTGATTTGAATTCTCAAGACAAGGACCCGATAAAGTCTATCCACTTCAGTAATTCGAATCCTGTCTGCCATGCATTTGATCAAGATGCTAAGGACGGGCATGATTTGCTCATAGGCTTGTTCTCTGGCGATGTCTACTCGGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGATTGTCGGGGCGCACCATTACAACAAAGATGGAATTCTCAATAACAGTCGTTGTACATGTATTTCTTGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTGCGCATGCTGATGGGAATTTGTACGTATATGAAAAGAATAAAGATGGTGCTGGTGATTCTTCATTCCCAATCCTCAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGGTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAGCGGATGGGACATACATGGCAACAGTTGGACGAGATGGTTACTTGCGAGTGTTTGATTATGCAAAAGAACAACTTATATGCGGCGGTAAAAGTTATTATGGAGGATTATTATGTTGTGCTTGGAGCATGGATGGAAAGTATATTTTGACGGGAGGAGAAGATGATTTGGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTTGCATGGGGCGAGGGACATAACTCATGGGTCAGTGGAGTGGCTTTTGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACAGTTATGTATCGATTCGGTTCAGTTGGTCAGGATACACAATTGCTTCTATGGGATCTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGTCCCCCCGGTGGATCCCCGACTTTTGGTTCCCCAACTTTTAGTACTGGAAGTCAGTCATCCCATTGGGACAATGTAGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGGGATGTTCCAAAAATCTCTCCGCTGGTTGCTCATCGTGTGCATACCGAGCCACTTTCTAGCGTGATATTTACCCAGGAATCTGTACTTACAGCCTGCCGGGAGGGGCACATCAAAATCTGGACAAGACCTGGCATAGCCGAGAGCCAGCCTAGCAACTCGGAAACCTTGTTAGCTACCAGTCTCAAGGAGAAGCCTCCACTTTCTAGCAAGATCAGCAACTCTAGCTACAAACAATAA 1683 0.4504 MMNTANGNMTTPSSSSSGGGGGGGTTQSQGLKTYFKTPEGKYKLQFEKTHPAGLLQFNHGKTVSLVTLAHLKEKAAPSTPTASSSSFSASSGVRSAAARLLGGGSNGSRALSFVGGNGSSKSNGGTARIGSIGASSLSSSVANPNFDGKGSYLIFNAGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPILKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSADGTYMATVGRDGYLRVFDYAKEQLICGGKSYYGGLLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTFGSPTFSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSSVIFTQESVLTACREGHIKIWTRPGIAESQPSNSETLLATSLKEKPPLSSKISNSSYKQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04261 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 386 IPR001680 GO:0005515
Trre13g04261 560 Gene3D - 22 530 IPR015943 GO:0005515
Trre13g04261 560 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g04261 560 SMART WD40_4 338 377 IPR001680 GO:0005515
Trre13g04261 560 SMART WD40_4 380 432 IPR001680 GO:0005515
Trre13g04261 560 SMART WD40_4 296 335 IPR001680 GO:0005515
Trre13g04261 560 SMART WD40_4 486 523 IPR001680 GO:0005515
Trre13g04261 560 SMART WD40_4 229 267 IPR001680 GO:0005515
Trre13g04261 560 SUPERFAMILY WD40 repeat-like 159 523 IPR036322 GO:0005515
Trre13g04261 560 PANTHER WD REPEAT PROTEIN 20 538 - -
Trre13g04261 560 Pfam WD domain, G-beta repeat 307 335 IPR001680 GO:0005515
Trre13g04261 560 Pfam WD domain, G-beta repeat 352 377 IPR001680 GO:0005515
Trre13g04261 560 MobiDBLite consensus disorder prediction 529 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04261 Trre-Chr13 50163042 50168216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04261 312 439 Miscellaneous Gene Families AT5G08390 23.438 1.11e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04261 K24741 - gmx:100782580 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04261 13 50163042 50168216 Trre13g04261 13 50163042 50168216 ECH