Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04258 ATGGCAAAGCTATTCAATTTTCTTACTTTTTTCTTTCTCAACATGTTCATCATTGTGACATTGTTTGAAACAATTTCAGCTCAAACAGCTGTATCTCCGGCACCAGCAGGACCATTGAACATAACAAAAGTCCTAGAAAAAGCAGGACAATTCACAACATTCATTAAGTTACTCAAAGCGACACAAGTATCCGATCGAATCAATTCGCAACTCAATAACTCGAATCAAGGACTAACAATCTTTGCACCAACAGATAATGCATTCTCAAGTCTAAAATCAGGAACATTGAATTCAATTAGCACACAAAACCAACTTCAACTTTTGCAGTTTCATATTCTACCAACACTTTACACAATCTCGCAGTTTCAAACTGCTAGTAATCCTTTGCATACACAAGCTGGAAACAGTGATGATGGAGAGTATCCTCTTAATGTTACTACTTCTGGAAATCAAGTTAATGTAACTACTGGTGTGATTGATACAACTGTTTCTAATACTATTTATAGTGATAGCCAGCTTGCAGTATATCAGGTTGATCAGGTGCTTCTTCCTATGGCACTTTTTGGACAAGGTCCGACTGCGGCACCAGCTGAGGCACCTGCACCGACTAAGCCGGAGAAAAGTGTTCGGGCTTCTGATGCTCCAAAAGGGTCTTCGGATAGTCCGGCTGATGATTCGAGTGCAGTTGACTATGCAGTTAATGGTGTTGCATTGTTTGTTGCCAATGTTGTTTTGTCTTGTTTGTGGATGTAA 753 0.3958 MAKLFNFLTFFFLNMFIIVTLFETISAQTAVSPAPAGPLNITKVLEKAGQFTTFIKLLKATQVSDRINSQLNNSNQGLTIFAPTDNAFSSLKSGTLNSISTQNQLQLLQFHILPTLYTISQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNVTTGVIDTTVSNTIYSDSQLAVYQVDQVLLPMALFGQGPTAAPAEAPAPTKPEKSVRASDAPKGSSDSPADDSSAVDYAVNGVALFVANVVLSCLWM 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04258 250 MobiDBLite consensus disorder prediction 193 226 - -
Trre13g04258 250 Gene3D FAS1 domain 20 185 IPR036378 -
Trre13g04258 250 SMART fasc_3 79 185 IPR000782 -
Trre13g04258 250 FunFam Fasciclin-like arabinogalactan protein 11 20 184 - -
Trre13g04258 250 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10 241 IPR045003 -
Trre13g04258 250 Pfam Fasciclin domain 50 184 IPR000782 -
Trre13g04258 250 SUPERFAMILY FAS1 domain 37 184 IPR036378 -
Trre13g04258 250 ProSiteProfiles FAS1/BIgH3 domain profile. 38 182 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04258 Trre-Chr13 50151022 50151774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04258 - - mtr:11427146 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04258 13 50151022 50151774 Trre13g04258 13 50151022 50151774 ECH