Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04196 ATGAGAGATTTTGTGATCCTCGGTTCTTCCATCATCACTCCACCTCCCAACCCACAACCACCATCTTCATCTTCATCATCTTCTACTCCACAACACCGTTACACAATCAAACCCCACAAAACCTCTCTTCAAAAGCTCCCTCCTTTATCTCCCACTACTCTTCTTCAAACCCCTCTCATTCTTAAAGAATTTGAAACTGTTCTACATGGAACGCTTGATTCTGATGTGGATGCTGAAGTCTTAGCCAATGCGGTTCTGATGGGTATTAAAGACAGAAATGTTAGGATTGTGATTGATACTTTGAATAAAGTGGAGGAAGGTCTTGGTGAAATTTCTCTTTCTACTCATCTTGATGCCTCTTCCATTGCAAATGAGTGTTGTCATATGGTTTCATGTGGTCACATTGAAGAAGCTGTTGAATTGATGGAGGTTCTCTCACGTTTCCAGTTATCGATTGCACAACTTGTTCAGCCATCTGACATTATAAAAAGATGTGTTCTTAGTCGTAAACCAAATTTAGCTGTGAGGTATGCTACCCTTCTCCCACAAGCGCACATATTATTTTGCAACATCATATCTGAATTTGGCAAAAGTAGGGATTTGGTTTCTGCTCTGAAAGCTTATGATGCAATAAAGAAGAAATTAGAAAGACCCAATATGTACATATACCGGGCAATAATTGACACTTGTGGTCTCTGTGGCGGTTTCATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTCAACTACTCGTTAAATCTATATCAGAATATGCAGAAGCTAGGCCTGAAACCAGATATGACATCCTATAACATCCTACTGAAAGCATGCTGTGTTGCCGGAAGAGTTGACCTGGCCCAAGACATGTATAAGGAACTCAAGCATTTGGAATCGGTGGGACAGCTTAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTCTAAGAATCAAGCGTGACATGCAATCTGCTGGTGTTTCTCTTAATATTGTTGCGTGGTCATCATTAATCAGTGCATGTGCGCATGCAGGGCTTGTAGAGCAGACAATTCAGTTATTTGAAGAAATGCTTTCGACTGGCTGTGAACCTAATACACAGTGTTTCAACATCATTTTACATGCATGCGTTGAAGGCTGCCAATATGACAGGGCTTTTCGGTTTTTCAATTCTTGGAAGGGAAATAAGATGCTAGTGTCCTCTGGTGAAAACTACAATAGTAATTCAGAGCAGGGAGACACGGATAATGTTGCCACAGTGCCAAAAGGCATTTCTAGTTCACATATCTTGAGTTTTACCGAGAGGTTCCCTTTCGAACCAACTACATCAACATACAATATTTTACTGAAGGCCTGTGGTACTAATTACTATCATGCAAAAGCGTTAATCAATGAGATGAGAACAGTAGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGATATATGCGGAGGATCAGAAAATGTGGAGGGTGCCATTGAGATTTTGAGAACCATGGTTGATGCTGGAATTAAACCTGATGTTGTTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTACGCAAGCATTAAAATTATATGAAGAAATGAAAAGCTACGAGACACATCCAAATTTGGTGACATATAATACACTTCTAAGGGCACGCAGTAAATACGGATCCTTACGTGAAGTGCAACAGTGCTTATCTGTATATCAGGATATGCGAAAAGCGGGGTTCAAAGCCAATGACTACTATCTGGAGGAGCTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGACAACGAAGATTACGAAGGAGAATTTTCTACCAGCAAGACATCTGAAATAGAAAGACCTCAGAGTATGCTTCTTGAAAAAATTGCGGCACATCTATTAAAGAGAGTAGCTGACATCTTGGCAATTGATGTTCAAGGACTCACAAAGGTTGAAGCTCGCCTGGTCATTCTTGCAGTTCTTCGAATGATCAAAGAGAACTATGCTATTGGGCATTCGGTGAATGATGACATATTGATCATCATAGGAGCTACCAAAGCCGATGAAAATCCATCCAAAGACATATTAGAAGTGCAAGAAGCCATGATGAAACTTCTTAGGAATGAATTGGGACTTGAGGTTTTTCCAGCCAGAACCAGATTTGCACCAAATGACACACCAAAGTTACAGACCCCCAAACTTCCAAATCTCACCATGGAAGCACTGCCAGGAGAGAATGCATCAACCACAACAATGGGGTTTCACACAAGGAGACCTGCACTTCTGCAAAGACTGAAGGTCACCAAAAAATCACTACACCGTTGGTTGCAAAGGAAAGGAAGCGTAAATTAA 2439 0.4006 MRDFVILGSSIITPPPNPQPPSSSSSSSTPQHRYTIKPHKTSLQKLPPLSPTTLLQTPLILKEFETVLHGTLDSDVDAEVLANAVLMGIKDRNVRIVIDTLNKVEEGLGEISLSTHLDASSIANECCHMVSCGHIEEAVELMEVLSRFQLSIAQLVQPSDIIKRCVLSRKPNLAVRYATLLPQAHILFCNIISEFGKSRDLVSALKAYDAIKKKLERPNMYIYRAIIDTCGLCGGFMKSRYIYEDLLNQKITPNIYVFNSLMNVNSHDLNYSLNLYQNMQKLGLKPDMTSYNILLKACCVAGRVDLAQDMYKELKHLESVGQLKLDVFTYSTIIKVFADAKLWQMALRIKRDMQSAGVSLNIVAWSSLISACAHAGLVEQTIQLFEEMLSTGCEPNTQCFNIILHACVEGCQYDRAFRFFNSWKGNKMLVSSGENYNSNSEQGDTDNVATVPKGISSSHILSFTERFPFEPTTSTYNILLKACGTNYYHAKALINEMRTVGLSPNQISWSILIDICGGSENVEGAIEILRTMVDAGIKPDVVAYTTAIKVCVESKNFTQALKLYEEMKSYETHPNLVTYNTLLRARSKYGSLREVQQCLSVYQDMRKAGFKANDYYLEELIEEWCEGVIQDNEDYEGEFSTSKTSEIERPQSMLLEKIAAHLLKRVADILAIDVQGLTKVEARLVILAVLRMIKENYAIGHSVNDDILIIIGATKADENPSKDILEVQEAMMKLLRNELGLEVFPARTRFAPNDTPKLQTPKLPNLTMEALPGENASTTTMGFHTRRPALLQRLKVTKKSLHRWLQRKGSVN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04196 812 NCBIfam pentatricopeptide repeat 290 315 IPR002885 -
Trre13g04196 812 NCBIfam pentatricopeptide repeat 542 575 IPR002885 -
Trre13g04196 812 NCBIfam pentatricopeptide repeat 507 541 IPR002885 -
Trre13g04196 812 NCBIfam pentatricopeptide repeat 363 397 IPR002885 -
Trre13g04196 812 NCBIfam pentatricopeptide repeat 328 361 IPR002885 -
Trre13g04196 812 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 302 642 - -
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Trre13g04196 812 Gene3D Tetratricopeptide repeat domain 186 318 IPR011990 GO:0005515
Trre13g04196 812 Gene3D Tetratricopeptide repeat domain 319 454 IPR011990 GO:0005515
Trre13g04196 812 Gene3D Tetratricopeptide repeat domain 456 654 IPR011990 GO:0005515
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 317 IPR002885 -
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Trre13g04196 812 Pfam PPR repeat 328 358 IPR002885 -
Trre13g04196 812 Pfam Pentacotripeptide-repeat region of PRORP 194 314 IPR033443 -
Trre13g04196 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 612 IPR002885 -
Trre13g04196 812 MobiDBLite consensus disorder prediction 10 33 - -
Trre13g04196 812 Pfam Pentatricopeptide repeat domain 470 518 IPR002885 -
Trre13g04196 812 Pfam Pentatricopeptide repeat domain 528 585 IPR002885 -
Trre13g04196 812 Pfam PPR repeat family 361 407 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04196 Trre-Chr13 49693315 49700029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04196 234 633 Glycosyltransferase AT1G05670 22.010 5.35e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04196 - - gmx:100794606 1188.33