Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g04185 | ATGAAGAAACAATTGACAGGTTTAAGGGGTGATTCTCACTTGCACTCGGCTATTCGAGTTGGAAATTCGGAATCGGTATCGGAAATAATCTCTGAGAATCAAGGTGAAGAAGAGTTAAAGGAATTATTTTCTAAGCAAAATAATTCTGGTGAAACTGCTTTATATATAGCTGCTGAAAATGGTCATCTTGATATAGTTAAGGAATTGATCAAATATCATGATGTTGGATTGGCTAGCTTGAAAGCTAGAAATGGATTTGATGCATTCCATGTTGCTGCTAAAAATGGAAATTTAGAGATATTGAAGATGCTCACGGAGGCATTTCCTGAAATTTCAATGACGGTTGATTTGACAAACACTACTGCACTGCACACTGCTGTGTCGCAAGGACATCTTGAGATAGTAAATTTTCTCTTAGAGAAAAGTAGCAGCGTCGTAACTATTGCAAAGAGCAATGGGAAAACTGCATTTCATTCTGCTGCAAGAAATGGCCATGTGGAGGTCATCAAGGCCCTGCTTAGTAGTGAACCTGAAATTGCAATGAGAATTGATAAGAAGGGGCAAACTGCACTCCATATGGCTGTTAAAGGACAAAATCTGGAGGTAGTAGACGAGCTTTTGAAACTGAACCCATCTTTTGCTAATATGGTGGATGCCAAGGGAAACACTGCTCTGCATATAACAACCCGGAAGGGTCGTCTACAGATTGTTCAGAAACTACTAGAATGCAAAGAAATAGACACTGATGTTATTAATAAATCCGGAGAAACAGCTTTGGATATTGCAGAGAGAACCAGTCGCTTGGACATTGCCAAATTTTTGCAGGATCGTGGAGCTCAAAATGCTAGGTCCATCAAATCACCTTCAGCAAACAGAGCCCTTGAACTCAAACGAAATGTGAGTGACATAAAAAGTGGGGTGCATAACCAGCTGGAACACACATTTAAAACACAAAGACGTATGAAAGGCATAGCAAAGCGAATTAACAAGATGCATGCTGAGGGACTTAACAATGCAATCAACTCCAACACCGTTGTTGCTGTCCTCATTGCAACAGTTGCTTTTGCTGCCATATTTACTGTCCCAGGCCAGTATCCTCAGGACACTGAGCACCTCTCGCCTGGAATGTCTCCTGGGGAAGCCAATATTGCTCCCAATATTGAGTTCCTGATATTCGTAATATTTGATTCTACGGCCCTCTTCATATCATTAGCTGTTGTGATTGTCCAAACGTCGGTGGTTGTTATTGAGAGAGAAGCAAAGAAACAAATGACGGCAATTATAAATAAGTTAATGTGGATAGCCTGTGTGTTAATTTCTGTGGCATTCCTTGCAATGTCATACATAGTTGTTGGGGATCAGAAAGAATTGGCTATTGCAGCCACGGCTCTAGGAACGGTGATCATGGCGGCTACTCTAGGAACACTCTGTTATTGGGTGATTGCTCACCGACTTGAGGCCTCCAGATTACGAAGTCTCAGAACAATGCCAAGCAGTAGGCAGTCATTGACTATGTCAGCAATGTCAGCTTCCGAGAATGAGTATAAAACAGTGTACGCAATATAA | 1566 | 0.4132 | MKKQLTGLRGDSHLHSAIRVGNSESVSEIISENQGEEELKELFSKQNNSGETALYIAAENGHLDIVKELIKYHDVGLASLKARNGFDAFHVAAKNGNLEILKMLTEAFPEISMTVDLTNTTALHTAVSQGHLEIVNFLLEKSSSVVTIAKSNGKTAFHSAARNGHVEVIKALLSSEPEIAMRIDKKGQTALHMAVKGQNLEVVDELLKLNPSFANMVDAKGNTALHITTRKGRLQIVQKLLECKEIDTDVINKSGETALDIAERTSRLDIAKFLQDRGAQNARSIKSPSANRALELKRNVSDIKSGVHNQLEHTFKTQRRMKGIAKRINKMHAEGLNNAINSNTVVAVLIATVAFAAIFTVPGQYPQDTEHLSPGMSPGEANIAPNIEFLIFVIFDSTALFISLAVVIVQTSVVVIEREAKKQMTAIINKLMWIACVLISVAFLAMSYIVVGDQKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTMPSSRQSLTMSAMSASENEYKTVYAI | 521 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 118 | 145 | - | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 118 | 150 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 242 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 9 | 503 | - | - | |
| Trre13g04185 | 521 | SMART | ANK_2a | 254 | 284 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 84 | 113 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 9 | 41 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 49 | 77 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 152 | 181 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 220 | 250 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 186 | 215 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SMART | ANK_2a | 118 | 148 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 186 | 208 | - | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 186 | 208 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | SUPERFAMILY | Ankyrin repeat | 14 | 279 | IPR036770 | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 84 | 106 | - | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 242 | - | - | |
| Trre13g04185 | 521 | Gene3D | - | 212 | 296 | IPR036770 | - | |
| Trre13g04185 | 521 | Gene3D | - | 1 | 145 | IPR036770 | - | |
| Trre13g04185 | 521 | Gene3D | - | 146 | 211 | IPR036770 | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 49 | 71 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 84 | 116 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 152 | 174 | - | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat profile. | 152 | 184 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | Pfam | Domain of unknown function | 334 | 450 | IPR026961 | - | |
| Trre13g04185 | 521 | ProSiteProfiles | Ankyrin repeat region circular profile. | 49 | 71 | - | - | |
| Trre13g04185 | 521 | Pfam | Ankyrin repeats (3 copies) | 152 | 208 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | Pfam | Ankyrin repeats (3 copies) | 218 | 280 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | Pfam | Ankyrin repeats (3 copies) | 10 | 75 | IPR002110 | GO:0005515 | |
| Trre13g04185 | 521 | Pfam | Ankyrin repeats (3 copies) | 81 | 144 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g04185 | Trre-Chr13 | 49611824 | 49614113 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre13g04185 | 1 | 521 | Miscellaneous Gene Families | AT1G07710 | 62.808 | 0.0 | 615 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g04185 | - | - | gmx:100787392 | 830.476 |