Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04151 ATGGCTATAACCGCCACCATTACAGTTCCTATTACATCACCAACAACTCGTCGCACACTTTCCTCCGTCAATTCCTTTCTCCCTTCATCTTCCCGATCCATTTCCGTCACACCACAACGCACTTTCAAATACCCTAATTCCCGCCTCGTTGCTGCTTCATCCATGAAAACAGAAACTCCCGTTAAATCAACAACCTCCACTTCATTCCTTCACCAAAAGGAAACTGGCTTTCTCCATTTCGCTAAATATCACGGTCTCGGAAACGACTTCGTTTTGATTGATAATAGAGATTCTTCCGAACCGAAGATTAGTTCAGAGAAAGCTGTGCAAATATGTGATCGTAACTTTGGTGTTGGTGCTGATGGTGTTATCTTTGTTTTGCCTGGTATTAATGGTACTGACTATACAATGAGGATTTTCAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGAGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAGTTTACATGGGAGACACAGTTTCACCATACACACTGGTGCTGGTCTGATTGTTCCTGAAGTCTTGGAGGATGGAAATGTCAAAGTTGATATGGGGGAACCAATTCTTAAGGCATCAGATGTGCCTACTAAATTAACTCCAAATAAGGATCAAGCTGTTGTTAAAGCAGAGATAGTTGTTGATGGAATTATCTGGAATGTTACTTGTGTTAGCATGGGAAATCCACACTGTTTAACCTTCAGTAACAACGAAACTCAGAATTTGCTTGTTGATGAATTGAAGCTTGCAGAAATTGGCCCAAAATTTGAACATCATGAGATGTTCCCTGCACGAACTAACACAGAGTTTGTGCAAGTTCTTTCTAATTCTCACCTGAAGATGCGTGTTTGGGAGCGTGGCGCAGGAGCAACTCTTGCCTGTGGAACCGGAGCTTGTGCTACAGTTGTTGCAGCCGTTCTTGAGGGTCGTGCTGGGTGGAACTGCACAGTTGATCTACCTGGTGGGCCTCTTCAGATTGAATGGAAGGAGGAAGATAATCATGTCTATATGACAGGTTCTGCGGAACTAGTGTATTATGGCTCTTTGCCCCTTTGA 1089 0.4334 MAITATITVPITSPTTRRTLSSVNSFLPSSSRSISVTPQRTFKYPNSRLVAASSMKTETPVKSTTSTSFLHQKETGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLHGRHSFTIHTGAGLIVPEVLEDGNVKVDMGEPILKASDVPTKLTPNKDQAVVKAEIVVDGIIWNVTCVSMGNPHCLTFSNNETQNLLVDELKLAEIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGWNCTVDLPGGPLQIEWKEEDNHVYMTGSAELVYYGSLPL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04151 362 ProSitePatterns Diaminopimelate epimerase signature. 141 155 IPR018510 GO:0005737|GO:0008837|GO:0009089
Trre13g04151 362 SUPERFAMILY Diaminopimelate epimerase-like 220 360 - -
Trre13g04151 362 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 213 346 - -
Trre13g04151 362 FunFam Diaminopimelate epimerase chloroplastic 202 349 - -
Trre13g04151 362 Hamap Diaminopimelate epimerase [dapF]. 78 362 IPR001653 GO:0008837|GO:0009089
Trre13g04151 362 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 51 209 - -
Trre13g04151 362 NCBIfam diaminopimelate epimerase 79 360 IPR001653 GO:0008837|GO:0009089
Trre13g04151 362 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 60 361 IPR001653 GO:0008837|GO:0009089
Trre13g04151 362 SUPERFAMILY Diaminopimelate epimerase-like 78 207 - -
Trre13g04151 362 FunFam Diaminopimelate epimerase, chloroplastic 51 201 - -
Trre13g04151 362 Pfam Diaminopimelate epimerase 80 200 IPR001653 GO:0008837|GO:0009089
Trre13g04151 362 Pfam Diaminopimelate epimerase 234 355 IPR001653 GO:0008837|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04151 Trre-Chr13 49374703 49379991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04151 K01778 - gmx:100807528 617.076