Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04145 ATGAAAATAGAATCAAAAAAATCAAAGTCATGGCCAAAATTAGCTGTGAAGAATTGGCTTAGTACAAAGAACAGTTCTGAAAAGTTTAACTCAGAATACTCTGTTAAAGGCACTTCGACAGAAACTAGAAAGAGTTGTTCAGATCAAGATAGTTACATCCTCGTACCAGATAATTTCTCTGAAGGGTGGTTGAAGCATTCTACAAATGGCATGAAACGTTCGGTGCTTGGGGAGAAAAAACCTTCATCCATCATCACAAATACTCTCAACCTTAGGATGTTTGTGGGGACGTGGAATGTTGGGGGAAAGTCACCAAACAAAGGATTGGACTTAAGGAATTGGCTTACGTCTACTTTGCCAGCTGACATATATGTTATTGGGTTCCAAGAAATTGTACCACTAAATGCTGGAAACGTGCTTGGATCAGAAAACAGTGGCCCAGCAACAAAGTGGCTGGCCTTTATTCATCAAGCCCTAAACTCTACCAACAATGAAAGCCCAAATCAAAAGCAACGCTTTAGCTTAGTAGCAAGCAAGCAAATGGTTGGTATTTTCTTGTGTGTGTGGGTACGCGCCGATGTTCGCAACCATGTTAGTCAATTAAAAGTGTCGCGCGTTGGCACTGGCATCATGGGCTACCTTGGAAATAAGGGTTCAATATCAATTAGCATGAGATTATTTCAAACCACGTTTTGCTTCGTTTGCACCCATTTGGCCTCTGGAGAGAAATGTGGTGACGAATTGCGAAGAAATTCAGACATCTTTGAAATTTTGAAGAGAACTAAATTTTTTCACTCGTATAAATCAATTGGTCAATCACTCCCTCCTGAAAGCATACTAGAACACGATAACATTATTTGGTTGGGCGATTTAAATTATCGACTTGCGGCTAGTTACGATGATATACACAAGCTTCTAAAAGAGAATAATTTGAACGCGTTACTCGAGAAGGATCAGCTATCGATTGAACAGAAAGCTGGAAGAATATTTGAAGGTTGGAATGAAGGAAACATACACTTTGCTCCTACTTACAAATACTTGACCAATTCAGATCAATATGTAGCACAAACCTGTAAATCGAAGGAAAAACGACGCACCCCTGCTTGGTGTGATAGAATTCTATGGAAAGGAGAAGGATTAAATCAAAAAATGTATGTTAGAGGAGAATCAAAATTCTCTGATCATAGGCCAGTGTATTCACTATTCACAGCACAAGTGGAAATGACAAACAAGAATCTTACACGTTCTGTTTCTTCTACTACTGTCTCAAGATCACCATGTCCTTTGAAACCATTCACAAATTCTTCTACATTGTCATCTACATGTTGTGCTGCTGCAAAAGTACAAGCAGAAGAACAACTCATGTTATTAGCAACAAGGACACAAAGTTGCATAGATTCTGTTTCAAGATTCTTGTAG 1419 0.389 MKIESKKSKSWPKLAVKNWLSTKNSSEKFNSEYSVKGTSTETRKSCSDQDSYILVPDNFSEGWLKHSTNGMKRSVLGEKKPSSIITNTLNLRMFVGTWNVGGKSPNKGLDLRNWLTSTLPADIYVIGFQEIVPLNAGNVLGSENSGPATKWLAFIHQALNSTNNESPNQKQRFSLVASKQMVGIFLCVWVRADVRNHVSQLKVSRVGTGIMGYLGNKGSISISMRLFQTTFCFVCTHLASGEKCGDELRRNSDIFEILKRTKFFHSYKSIGQSLPPESILEHDNIIWLGDLNYRLAASYDDIHKLLKENNLNALLEKDQLSIEQKAGRIFEGWNEGNIHFAPTYKYLTNSDQYVAQTCKSKEKRRTPAWCDRILWKGEGLNQKMYVRGESKFSDHRPVYSLFTAQVEMTNKNLTRSVSSTTVSRSPCPLKPFTNSSTLSSTCCAAAKVQAEEQLMLLATRTQSCIDSVSRFL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04145 472 Pfam Endonuclease/Exonuclease/phosphatase family 96 395 IPR005135 GO:0003824
Trre13g04145 472 SUPERFAMILY DNase I-like 82 419 IPR036691 -
Trre13g04145 472 SMART i5p_5 89 410 IPR000300 GO:0016791|GO:0046856
Trre13g04145 472 Gene3D Endonuclease/exonuclease/phosphatase 73 427 IPR036691 -
Trre13g04145 472 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 16 421 IPR045849 GO:0004445
Trre13g04145 472 FunFam Type I inositol polyphosphate 5-phosphatase 8 72 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04145 Trre-Chr13 49321911 49326159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04145 90 415 Acyl Lipid Metabolism Gene Families AT1G65580 30.789 4.06e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04145 - - psat:127130123 747.658