Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04088 ATGACGAGAATTAATCGAAATCGTGATCGCGCTTCTAATTATAACTGCGGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCTAGGACAAAACATGCAGCAAGAGATGCAAAGCGTGGCCTCCTGTCATGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCTAAGTATTGCCCTTTATTACCTGCCCCAAGGTCTACTATTGCAGCAGCGTTTAGTCCAGATGGAAAAGTTCTTGCCTCTACGCATGGTGACCACACAGTGAAGATAATCGACTGTGAAACTGGACGTTGCTTAAAGGTGTTAATTGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTGGCCAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCAGAGTGCATAACATCTCACCATTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGAGAAATAATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTATGACAAGAAAGGCGAAGCATCCTACTCACCAACTTTTGTGTTAAAGACAAGGCGATCTCTACGGGCTGTGCATTTTCACCCTCATGCTGCGCCATATCTTTTAACTGCCGAGGTCAATGATCTTGACTGTTCAGATTCCTCAATGACAGAGGCAACATCTATTGGTTATTTACAATATCCCCCACCTTCCTTTTTTGTCACAAATGTTCAACCTGCGGAACATGTTACTTTGTCCAGTGAATCATCTAATGTATCATTGCCTTTCTTCTTCGTTCCTTCATATACTGCTGATGAGTCGAGAGAAGAATTACCGGATGCTAGTCATGGTGTTGGCTCAGGTAGAATACAAATTGAGTCTTCTGCCGTGGTTCAGTTTCAAACGAACACAAATACAACAGAACAATATGATACTACAGTGTCTCCCATGGATACAGTCTCTGAGATGCCCACTAACTCTCCTGCACACACTACTTTCTCTAATGGAATGGGAGTTGGCATCCGGAACCTCACAGCGGATGGTATGGAGACTGATGAAATCAGACCTGCTGAAGGAAGTCAACACAGATACCCTACTGATGCCAGTTCTCTCAATGTTATGCTACATGGCCCATCTAGACAAACTGCAAATCGTGGAGTTCATTCAGAGGGTGGCCAATTTCATCAGTTTGTTTCTTCAAGAGATTCAAGTGGATGGGAATTACCTTTTCTACAAGGATATTTGATGGGTCAAAGCCAAGTTGGCATCCCTTCAATGCATTCTCACATGGGTGTTACTCGTGACTCTCTAGCTCAACAGATTAGTTCTTCTGTAGCATCGAATAGTAATACTCTTTCAACTTCTAATGTTGATGTTGCAGTCCCATCTTCAGCAATGTCTGGCAGCATCAACATGCCCGGGACTTTTATAAGAGGACCAGGTTTTCGGAGTTATATATCACAACCACGTACACCTGTACCAGAATCTGAAAATCTCGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACAATCATGAACCGAATTCAGTCAGAACTCGCTACATCCGTGGCTGCAGCGGCAGCTGCTGAGTTGCCTTGTACCGTGAAGTTAAGGGTATGGTCTCATGACATAAAAAATCCATGTGCCCCACTAAATGCTGAAAGATGCCGTCTAACCATACCTCATGCTGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATATTTAGCTGCCTGTGTTGCATGTATGCTTCCACATATTGAAGCTGATCCAGGATTACAAACTCCTGTACATCAAGAGTCTGGCATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATCTATTCCCTAGAGGAGGCAACATTTGGATTGGTGCTTGCTTCTCGAGCAATTAGAGCTGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAACCATTGTCATTGATGGAGAAACAACGTTACCTATATATACAGTTTTAGAGGTATATAGAGTTTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCTGGAGGCGGGTTAGTTTATGGAACAAAGGAAGGAAAGCTCAGGATCCTCCACTATGATGGTGCTCACCCAGCGAATGGCACTGGACCAAGTTACTTTCCTGAGGAGACGATCGTCGGAGTCAGTCAGTAA 2313 0.4444 MTRINRNRDRASNYNCGNVFNLLARREISPRTKHAARDAKRGLLSWVEADSLRHLSAKYCPLLPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPTFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDCSDSSMTEATSIGYLQYPPPSFFVTNVQPAEHVTLSSESSNVSLPFFFVPSYTADESREELPDASHGVGSGRIQIESSAVVQFQTNTNTTEQYDTTVSPMDTVSEMPTNSPAHTTFSNGMGVGIRNLTADGMETDEIRPAEGSQHRYPTDASSLNVMLHGPSRQTANRGVHSEGGQFHQFVSSRDSSGWELPFLQGYLMGQSQVGIPSMHSHMGVTRDSLAQQISSSVASNSNTLSTSNVDVAVPSSAMSGSINMPGTFIRGPGFRSYISQPRTPVPESENLAASINTPHDGSDIQTIMNRIQSELATSVAAAAAAELPCTVKLRVWSHDIKNPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKTIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPANGTGPSYFPEETIVGVSQ 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04088 770 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 63 747 IPR011047 -
Trre13g04088 770 Gene3D - 51 227 IPR015943 GO:0005515
Trre13g04088 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 142 - -
Trre13g04088 770 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 15 766 - -
Trre13g04088 770 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Trre13g04088 770 Pfam WD domain, G-beta repeat 98 137 IPR001680 GO:0005515
Trre13g04088 770 Pfam WD domain, G-beta repeat 71 94 IPR001680 GO:0005515
Trre13g04088 770 SMART WD40_4 97 137 IPR001680 GO:0005515
Trre13g04088 770 SMART WD40_4 56 94 IPR001680 GO:0005515
Trre13g04088 770 SMART WD40_4 140 177 IPR001680 GO:0005515
Trre13g04088 770 SMART WD40_4 705 745 IPR001680 GO:0005515
Trre13g04088 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 146 IPR001680 GO:0005515
Trre13g04088 770 FunFam Activating molecule in BECN1-regulated autophagy protein 51 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04088 Trre-Chr13 48769628 48774423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04088 71 239 Miscellaneous Gene Families AT5G08390 25.543 1.79e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04088 K17985 - gmx:100817857 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04088 13 48769628 48774423 Trre13g04088 13 48769628 48774423 ECH