Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04081 ATGCATGTAGAGAAAGGTTTTTGGTTAGGGTTTTTCTTTTCTCAAAGAACCTGCGTTTTCGCCTCAACGATTCTTCGCTTCATTCATCCAAATTACACTGATATTTTTGAATTTGAATTTGAAAATTTTAAGGCTGAAGCAAAGAGGAATATTATGGCTGATTTAGAAAATTTGCTTTTGGAGGCTGCTGGGAGAAACCGGCATTCTCTCCCGCCTTCGAGTGAACGGAGGGACGGACAATTTTTGGATGGTGGGAGTGGTTCTGATTCTGACTCTGATTCTGATGATGATGATGGGCATGGTTATCGGGGTAAAAAGCCGAATCAGGTTCCTCTTAAGAAGAGAGGAAGAGAAGATGACAGTGGTGATGACAACGAGGGGGATAGTAGTGAGGAATCTGATGTTGGTGATGATCTTTATAAGGATGAGGATGATAGACAGAAACTTTCTGAGATGACTGAACTTCAAAGAGAGATGATTTTGTCGGATAGGGCTTCTAAGAAGGATGATAAAGATTTTTTGGGTAAGATAGCATCAAAGCGGGAGAAGGAAAAAAGGACATCTGTGTCTAGAAGAGAGAGTCCTCCGCCTCTTCCTTCTTCTCGTGTGCGGTCATCTGCCAGGTCTGCTGATAGGTCAGCTGCAAAGGATGGTGCTTTAAATGAACTGCGTGCCAAGCGGTTGAAACAGCAAGACCCAGAAGCGAAACGCAAGATGGAAGAGGAGTCGAAAAGTGAAGGACCGGGGCTTTTTTCGCAAAAAGGGAAACATAATTTCAGTAACTCAAGCTATAGCGGAAGTGAAAGTAGGTCTCATAGTGATGATGAAGGTTTGAATGGAGATGGAGGGATTATTGACAGCGATGATGACAAGATAATGTCTGGACGTGAAGTTCCTTCGTTTGAGGACATACGGGAAATCACCATTCCAAGGTCAAAACTTGCAAAATGGTTGATGGAGCCATTTTTTGAGGAGTTAATTGTGGGTTGTTTTGTAAGAGTTGGTATTGGTAGGTCAAAGACTGGGCCTGTCTATAGGCTCTGCATGGTGAAAAATGTTGATACCTCAGATCCTAACCGGCTGTATAAATTAGATAATAAAACCACATACAAGTACTTGAATGTTGTATGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGATTCTCCCCCGCTTGAGGAGGAATTTAAACAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGCCGGATGTTGATGAAGCTAGATGTGTTGGAAAAAAAGCAAGCCTTACAGAAGATCAATAATTTTGTTTACTCTGCAGCTACTGTGAAGCAGATGTTAGAAGAAAAAAAATCTACCTCGTGGAGGCCACTAAATATTGCAGCTGAGAAGGATCGGTTGAAAAGGGAATTGGAAATAGCAGAAAGCAAGAAAGATGCAGCTGCAGTAGAGAAGATCAAGACAAGACTGCAAGAGCTGGAGGAATCCCGGAAAGCTAAGGAGATGGATGCCAAGGCTTTGAGGCTTTCTGAGATGAACAGAAAGAACAGGTTTGAGAACTTCAAAAATGCATCTGAATTGAAGCCAGTAAGTAAAGCTTTGAAAGCAGGGGAGGCAGGTTATGATCCCTTTTCAAGGCGATGGACTAGATCAAGGAACTACTATAATTCAAAACCGGTTGAAGAGGCTGCAGCTGGAGATAATAGTTCTGGTGATGCAGTTGGTGATAGAGTCAACAATGGGACGGGAGCTGGTATGGTGGCCACTGCCGAGGCTTTGGAAGCTGCTGCTGATGCTGGGAAGTTAGTAGACACTAAAGCTCCGGTGGATCAAGGGACGAAGTCATATGTACTGCACGATTTTGAGCTTCCAATATCACTAGCCTTACTCCAAAAGTTTGGTAGAGCACAGGGAGTTCAGGCAGGGTTTATGGCAAATAAGCAGAGAATTGAAGAAACTGTTGGATTTCGAGTCCCAGAAAACGACGGAAGGAGTCATCTGCTGACATTAACAGTTAGTGATTACAAAAGAAGAATGGGGCTTCTTTAA 2043 0.4322 MHVEKGFWLGFFFSQRTCVFASTILRFIHPNYTDIFEFEFENFKAEAKRNIMADLENLLLEAAGRNRHSLPPSSERRDGQFLDGGSGSDSDSDSDDDDGHGYRGKKPNQVPLKKRGREDDSGDDNEGDSSEESDVGDDLYKDEDDRQKLSEMTELQREMILSDRASKKDDKDFLGKIASKREKEKRTSVSRRESPPPLPSSRVRSSARSADRSAAKDGALNELRAKRLKQQDPEAKRKMEEESKSEGPGLFSQKGKHNFSNSSYSGSESRSHSDDEGLNGDGGIIDSDDDKIMSGREVPSFEDIREITIPRSKLAKWLMEPFFEELIVGCFVRVGIGRSKTGPVYRLCMVKNVDTSDPNRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLMKLDVLEKKQALQKINNFVYSAATVKQMLEEKKSTSWRPLNIAAEKDRLKRELEIAESKKDAAAVEKIKTRLQELEESRKAKEMDAKALRLSEMNRKNRFENFKNASELKPVSKALKAGEAGYDPFSRRWTRSRNYYNSKPVEEAAAGDNSSGDAVGDRVNNGTGAGMVATAEALEAAADAGKLVDTKAPVDQGTKSYVLHDFELPISLALLQKFGRAQGVQAGFMANKQRIEETVGFRVPENDGRSHLLTLTVSDYKRRMGLL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04081 680 ProSiteProfiles Plus3 domain profile. 298 433 IPR004343 GO:0003677
Trre13g04081 680 Pfam Plus-3 domain 303 408 IPR004343 GO:0003677
Trre13g04081 680 MobiDBLite consensus disorder prediction 269 292 - -
Trre13g04081 680 MobiDBLite consensus disorder prediction 66 292 - -
Trre13g04081 680 MobiDBLite consensus disorder prediction 209 247 - -
Trre13g04081 680 MobiDBLite consensus disorder prediction 254 268 - -
Trre13g04081 680 SMART rtf1 298 410 IPR004343 GO:0003677
Trre13g04081 680 Gene3D - 297 431 IPR036128 GO:0003677
Trre13g04081 680 MobiDBLite consensus disorder prediction 140 191 - -
Trre13g04081 680 SUPERFAMILY Plus3-like 299 431 IPR036128 GO:0003677
Trre13g04081 680 FunFam RNA polymerase-associated protein RTF1 299 431 - -
Trre13g04081 680 PANTHER UNCHARACTERIZED 107 679 - -
Trre13g04081 680 Coils Coil 462 508 - -
Trre13g04081 680 MobiDBLite consensus disorder prediction 123 139 - -
Trre13g04081 680 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04081 Trre-Chr13 48694878 48697780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04081 K15178 - gmx:100818650 797.734