Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04079 ATGGATACAAAAGAAGAAGCAGAAGCTAATGAGGATAGACCTTCATCACCAATGTGGGTTCTACAACAGTTATCTGAGGGAGCATTTAGAGTTGCTGGTGAAGCATTGCAGAATATGTACTCTGGTGGTGGTGGTGGGTCAAGTGTGCCACAGATAGGGTCTAGTGGTGGTGCTGCTGCACATAGGAGATGTCAAAGTGAACTTGTTAGTAAAGGATTTCAACGTAGTGATAGTTTTCAGAAGTTAAAAGCTCGTGTGCATAAGGCGTGGGGTTGGCGTGGAAAATCAAGGGAAGAAGGTTTATCGGCGAATTTTAATCCTGAGATTATGGCGAACCAGAAACGTCAGTGGTATCAGCTTCATCCCAAATCTATGGATTGTTTAAATTATAAGGAGCCAACCTCGCTCTTTGAACATTTTGTGATTGTGGGGCTGCATCCAGATGCTAATTTGGAAGTCGTGGAGCATGCATTTGCAAAAAGGAAGAAATGGGAAAGAGAGAAGAAAACCTCTGAATGTCTCGATTACAGAATGGCGCAGCAACCAAAGCCGCCAGAACCTACTTTGGAACCTCAGATACTGTTCAAATATCCTCCTGCAAGGAGGTTAACAGTACGTTTGAAGGATTTAGCCTCCTTTTGCTTTCCTGAAGGTGTTAAGGCATCATTGTTGGAGAGGACTCCATCTCTAAGTGAACTAAATGAAATTGTCTACGGACAGGAGCATTTAGGCAGAGATGATCTATCATTTGTCTTTACACTCAAGGAAGCAGACAATACAACACTTTATGGAGTTTGCTTACACGTGCCTGAAATTGTTCAGAGACCCCCTGGTATCTTAGGCGGCGGATCATCTCTTTCTCTTCCCTCTGGGCTAGGCAGCCGTTTTCTAGTTTCTGCACCTCGCTGTTACTGTCTTCTGACAAAAGTTCCTTTCTTTGAGTTACACTTTGAGATGTTAAATAGTCTCATTGCACAGGAGCGTCTGAACCGGATTACTCAGTTTGTAAATGAGTTTACTCTTTCTGGTTGCATTCCTTCAATGCCCAAACTAGATGACCAATTGAGTTCGTATACTAACTCTCCAGACAGGGAATCATTTAGCGACTGGATGACTTGCGCAATACCTCTTGATGATGCAGCTGTCATTACTGCTGCTGCTGCTGGAATTATACCTGATGATGAAATTCCTCAGTTATCACCCAAAATATGGGATTCTCGCTGTCAATCCCCTGTAAGTGTGAGTGCCAGTGATGCTTCGGATGTTTGTCAGTTTAGAGATGTAGATAAAGATGGCAAGAAGTGTCTACAAGATCATGATACATGTGCTTTTGAGGGACCAGAAACTCATGATTCTGTGGAAAGAATATATCGAAATGGTGAATGCGGCCAAGTTTCTCCCAGTGTTGTAACATCTGTATCTGCTCGGGGTCGTAGCGTTGGAAGTTCTGAATCACTTTTCAGTCCAGTTAGAAGCATTGTATCGGAAGATGAGTATCATCCTTTTTCAAACAACGAAAGAGATAACGAAGATGATTTGTCAATGGAATGGGATATGGACCATAAGAATGATTTACTACAGATAGTGTGCAGATATCATGCTCAAGCTATTCCATCTCGAGGAAGTGAATTCGTCTTCCACCCTCTTGAACATTTACAAGCTATTCAATATATACGACATTCAGTTGTTTCTCTTGGCTTCAGAGAAAATTGTCTAGATTGTTCCGACTCAACTGAGGTTAATGCGAAGTTGGCAGCTGCTGAGGAAGCCCTTGCATTATCTGTATGGACAACTTCGACTACTTGTCGAGTTCTATCCCTTGATAGGTTGCTGGCATTAGTTACTGGAGTGTTATTGGAAAAACAAGTTGTAATATTGTGCCCAAATTTGGGTGTTCTATCTGCAGTAGTGCTTTCTCTTATACCCATGATTCGTCCATTTCAGTGGCAGAGTTTACTGCTCCCGGTTTTGCCTGCAAAAATGATCGATTTTCTTGACGCACCAGTTCCATATATTGTTGGCATACAACATAAACCAGATGATTTGAATATGAAAACTGCTAATCTTGTGGAAGTTAATGTAACGAAAGATCAGGTTAAAATGTGTCACTTGCCTAGACTTCCACAGCAAAGAGACCTTATTTCTCAGTTGAGTCCAATCCATGCAAAACTTTCACGTGAAAGTTCAATTTCTAGAAAGCATCCTATACATAGGTGCAACGAAGTCCAGGCTGAAACTGCAACTAAGTTTTTGAATATCATGTGGCACTATTTGGAGTCGCTTTGTTCGAATTTGAAATCGCATACGATAACTAGTGTACAATCAAATCACGACAGGGTTTCTTTACTTCTTAAAGATAGCTTCATTGATTCCTTTCCTATTAGGGACCAGCCTTTTATGAAGCTATTTGTAGATACGCAGCTTTTCACCGTTTTATCAGACTCTTGTCTATCAAGTTTCGAGAGTGGCAACTCATAA 2478 0.414 MDTKEEAEANEDRPSSPMWVLQQLSEGAFRVAGEALQNMYSGGGGGSSVPQIGSSGGAAAHRRCQSELVSKGFQRSDSFQKLKARVHKAWGWRGKSREEGLSANFNPEIMANQKRQWYQLHPKSMDCLNYKEPTSLFEHFVIVGLHPDANLEVVEHAFAKRKKWEREKKTSECLDYRMAQQPKPPEPTLEPQILFKYPPARRLTVRLKDLASFCFPEGVKASLLERTPSLSELNEIVYGQEHLGRDDLSFVFTLKEADNTTLYGVCLHVPEIVQRPPGILGGGSSLSLPSGLGSRFLVSAPRCYCLLTKVPFFELHFEMLNSLIAQERLNRITQFVNEFTLSGCIPSMPKLDDQLSSYTNSPDRESFSDWMTCAIPLDDAAVITAAAAGIIPDDEIPQLSPKIWDSRCQSPVSVSASDASDVCQFRDVDKDGKKCLQDHDTCAFEGPETHDSVERIYRNGECGQVSPSVVTSVSARGRSVGSSESLFSPVRSIVSEDEYHPFSNNERDNEDDLSMEWDMDHKNDLLQIVCRYHAQAIPSRGSEFVFHPLEHLQAIQYIRHSVVSLGFRENCLDCSDSTEVNAKLAAAEEALALSVWTTSTTCRVLSLDRLLALVTGVLLEKQVVILCPNLGVLSAVVLSLIPMIRPFQWQSLLLPVLPAKMIDFLDAPVPYIVGIQHKPDDLNMKTANLVEVNVTKDQVKMCHLPRLPQQRDLISQLSPIHAKLSRESSISRKHPIHRCNEVQAETATKFLNIMWHYLESLCSNLKSHTITSVQSNHDRVSLLLKDSFIDSFPIRDQPFMKLFVDTQLFTVLSDSCLSSFESGNS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04079 825 Gene3D - 594 759 IPR043153 -
Trre13g04079 825 Pfam DENN (AEX-3) domain 600 696 IPR001194 -
Trre13g04079 825 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 63 819 - -
Trre13g04079 825 SMART DENN_cls 299 697 IPR001194 -
Trre13g04079 825 Gene3D - 124 347 - -
Trre13g04079 825 ProSiteProfiles Tripartite DENN domain profile. 172 823 IPR037516 -
Trre13g04079 825 SMART uDENN_cls 133 270 IPR005113 -
Trre13g04079 825 Pfam uDENN domain 191 269 IPR005113 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04079 Trre-Chr13 48682707 48689454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04079 - - gmx:100791254 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04079 13 48682707 48689454 Trre13g04079 13 48682707 48689454 ECH