Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04076 ATGGAGGAAGAAGGTGAAATATACGACGGCGTTAGAGCTGAATTCCCTCTTTCCTTCGGTAAACAATCCAAATCTCAAACCCCTCTTGAAACCATTCACAACGCTACTCGTCGCAGTTCTTCTGCTGTTCCCAATTCCAACGATTTTCCTTCCATCTCTTCCTCTTCCAAGGAATGGCTTCATTCCGTTCGTTCCTCCAAAAACCCTACCCCTCCTCCTCCCCTCCACGACGATTCCCCCCTCGTCGGACCTCCTCCACCGCCACCACATAATAACCACGAGGAAGAGGAGGATGATGACGACGACGACGAGATGATTGGCCCTCCCCCGCCGCCACCCGGTTCCAATTTGGATGATTCCGATGCCGAAGACGACTCGGATCAAGACCAACCGAGTAACCGCTTTCGTATTCCTCTTAGCAACGAGATTGTGCTCAAGGGACATACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACACCGGTTCCAGAGTACTATCTGGAAGCTATGACTATATGGTCCGTATGTATGATTTTCAAGGAATGAATTCTCGTTTGCAATCGTTTCGACAAATTGAGCCGTCTGAAGGGCATCAAATCCGCAATTTAAGCTGGAGCCCAACTGCTGATCGCTTTTTGTGTGTAACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGCCTCACTCTGGGTGAGTTTGTAAAGGGAGACATGTATATTCGCGATTTAAAGAATACCAAGGGTCATATAACTGGATTGACATGTGGAGAGTGGCACCCAAAAACTAAGGAGACTGTTTTAACATCATCAGAGGATGGGTCGCTCCGCATATGGGATGTGAATGACTTCACAACTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCATGATGGTAAATGCATTACTGGGGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAACCCGGATGGGGGAGTAGGCCTGATATATATATTGAAAAGTGTCACGAGGATGATATTACTAGTCTGAAATTTTCTTCTGATGGGAGAACCTTATTGTCAAGGAGCTCTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAGGAAGCATTAAAGGTATTTGGAGAACTGCCAAATCACTACGGACAAACAAATATTGGCTTCAGTCCTGATGAGCAACTATTTTTTACTGGAACATCTGTAGAAAGGGATAGCACAACAGGAGGTTTATTGTGCTTCTTTGATAGATTAAATCTTGAGCTTGTTTCAAAAGTTGGCATATCACCCACTTGCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAACAATCAATTGATGACTTTGAGGCAAATCCTGTCATTCACAATCCTCATGCTTTGCCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTACCTATGACAGGACCTGGCTTTGGTGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACCCAGTATCTTCTTAAGAAAGGTGGCATGATTAAGGAGACATGGATGGATGAAGATCCAAGGGAGGCTATCCTAAAATATGCTGATGTTGCAGCAAAAGAACCAAAGTTCATAGCTCCAGCATATGCCGAAACTCAACCTGAGCCATTGTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1851 0.4489 MEEEGEIYDGVRAEFPLSFGKQSKSQTPLETIHNATRRSSSAVPNSNDFPSISSSSKEWLHSVRSSKNPTPPPPLHDDSPLVGPPPPPPHNNHEEEEDDDDDDEMIGPPPPPPGSNLDDSDAEDDSDQDQPSNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVRMYDFQGMNSRLQSFRQIEPSEGHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHITGLTCGEWHPKTKETVLTSSEDGSLRIWDVNDFTTQKQVIKPKLARPGRVPVTTCAWDHDGKCITGGIGDGSIQIWSIKPGWGSRPDIYIEKCHEDDITSLKFSSDGRTLLSRSSDDSLKVWDLRKTKEALKVFGELPNHYGQTNIGFSPDEQLFFTGTSVERDSTTGGLLCFFDRLNLELVSKVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTISERGALVCVARAPRKQSIDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04076 616 MobiDBLite consensus disorder prediction 514 544 - -
Trre13g04076 616 MobiDBLite consensus disorder prediction 19 66 - -
Trre13g04076 616 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 7 615 - -
Trre13g04076 616 Pfam WD domain, G-beta repeat 244 279 IPR001680 GO:0005515
Trre13g04076 616 Pfam WD domain, G-beta repeat 301 327 IPR001680 GO:0005515
Trre13g04076 616 Pfam WD domain, G-beta repeat 342 373 IPR001680 GO:0005515
Trre13g04076 616 Pfam WD domain, G-beta repeat 143 177 IPR001680 GO:0005515
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 179 - -
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 288 IPR001680 GO:0005515
Trre13g04076 616 MobiDBLite consensus disorder prediction 67 89 - -
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 281 - -
Trre13g04076 616 MobiDBLite consensus disorder prediction 514 533 - -
Trre13g04076 616 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Trre13g04076 616 FunFam Nucleotide binding protein 84 233 - -
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 375 - -
Trre13g04076 616 SMART WD40_4 334 373 IPR001680 GO:0005515
Trre13g04076 616 SMART WD40_4 285 327 IPR001680 GO:0005515
Trre13g04076 616 SMART WD40_4 184 224 IPR001680 GO:0005515
Trre13g04076 616 SMART WD40_4 236 279 IPR001680 GO:0005515
Trre13g04076 616 SMART WD40_4 138 177 IPR001680 GO:0005515
Trre13g04076 616 MobiDBLite consensus disorder prediction 18 137 - -
Trre13g04076 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 382 IPR001680 GO:0005515
Trre13g04076 616 SUPERFAMILY WD40 repeat-like 121 461 IPR036322 GO:0005515
Trre13g04076 616 Gene3D - 234 474 IPR015943 GO:0005515
Trre13g04076 616 Gene3D - 87 233 IPR015943 GO:0005515
Trre13g04076 616 MobiDBLite consensus disorder prediction 594 616 - -
Trre13g04076 616 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Trre13g04076 616 PRINTS G protein beta WD-40 repeat signature 360 374 IPR020472 -
Trre13g04076 616 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Trre13g04076 616 FunFam WD repeat-containing protein 70 234 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04076 Trre-Chr13 48654311 48657945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04076 266 446 Miscellaneous Gene Families AT5G08390 26.374 2.47e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04076 K24752 - gmx:100815380 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04076 13 48654311 48657945 Trre13g04076 13 48654311 48657945 ECH