Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04060 ATGGTAGAGAATCCATTCATCTCTCCAAACACTGCTTGTTGGAAATTAAACAACTACTACCATTCATTGGAGAAAGCTCTTTCTCTCATTTTCTCAACTCCAATTTTTCTTGACATACAAATGGAAGGAGAAGGAAATGAGTTGAAACCAATGGATGCTGAGCAACTGAGAGAGCAAGCTCATAAGATGGTAGATTTCATTGCTGATTACTACAAAACTATCGAAAATTTCCCAGTTCGCAGCCAAGTTGAGCCAGGTTATCTTGGAAAGCTTCTACCAGATTCTGCTCCTAATTACCCTGAACCATTGCAACATGTTTTGAATGATGTACAGGAAAAGATACTACCGGGGGTAACACATTGGCAAAGCCCGAATTATTTTGCATATTTTCCATCCAATAGCAGCACTGCTGGTTTTTTAGGAGAGATGCTTAGTGCTGGTCTCAACATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTCGAATCAATTGTCCTTGACTGGCTTGCCAAGGCACTCCTTCTGCCTCAGGATTTCCTTTCTAATGGGAAAGGCGGCGGAGTTATACAGGGAACAGCAAGTGAAGCTGTGCTAGTTGTATTGTTGGCTGCTCGTGACAAGATCCTGCGGACAGTTGGAAGGAGTGCCCTTCCTAAGCTTGTGACTTATGCATCTGACCAAGTCCACTCCTCTTTACAAAAAGCTGTCCAGATAGGAGGACTTAATCCAGATCTTTGCAGGTTGCTTAAAACCGATTCTTCCACAAATTTTGCGCTTTCCCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCCAGTGGTCTTATACCTTTTTTCTTATGTGCTAACGTTGGTACTACTTCGTCAACAGCTGTTGATCCTCTACCTGGATTAGCGAAAGTCACGAGGACCAACAACATTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTATATGTCCAGAGTACCGCCACTTCATTGACGGGGTTGAAGAAGCAGATTCATTTAACATGAATGCACATAAATGGTTCCTTACTAACTTTGACTGTTCACTACTTTGGGTTAAGGACAGGAATGCTCTGATTCAGTCACTGTCTACAAATCCTGAATTTCTGAAAAATAAGGCCTCTGAAGGAAACATGGTCATAGATTACAAAGACTGGCAAATTCCTCTTGGGCGTCGCTTTAGATCATTAAAACTTTGGATGGTGCTGCGGCTCTATGGATTGGAAGGCCTGCGAGCTCACATAAGAAACCACATCGCAATAGCAGCTTGTTTTGAGGAGCTTGTAGTTCAAGACACAAGATTCAAGGTTGTTGCGCCTCGAACATTCTCATTAGTTTGTTTTCGTCTTTTGCCTCCCTCAAACTCTGAAGATAATGGCAATAAACTGAACCAGGATCTACTCGACTCAGTAAACTCAACAGGAAGTGTTTTCATAACACACACGGTTCTATCCGGTGAGTACATTCTACGTTTAGCAGTAGGAGCACCATTGACAGAAGTGAGGCATGTCAATGCGGCATGGCAGATTTTGCAAGAAAAAGCCACTGCTCTATTAGAGAACTTATAG 1593 0.4256 MVENPFISPNTACWKLNNYYHSLEKALSLIFSTPIFLDIQMEGEGNELKPMDAEQLREQAHKMVDFIADYYKTIENFPVRSQVEPGYLGKLLPDSAPNYPEPLQHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSTAGFLGEMLSAGLNIVGFSWITSPAATELESIVLDWLAKALLLPQDFLSNGKGGGVIQGTASEAVLVVLLAARDKILRTVGRSALPKLVTYASDQVHSSLQKAVQIGGLNPDLCRLLKTDSSTNFALSPDVLSEAISNDIASGLIPFFLCANVGTTSSTAVDPLPGLAKVTRTNNIWFHVDAAYAGSACICPEYRHFIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASEGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRAHIRNHIAIAACFEELVVQDTRFKVVAPRTFSLVCFRLLPPSNSEDNGNKLNQDLLDSVNSTGSVFITHTVLSGEYILRLAVGAPLTEVRHVNAAWQILQEKATALLENL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04060 530 Gene3D Aspartate Aminotransferase, domain 1 425 530 IPR015422 GO:0003824
Trre13g04060 530 Gene3D - 133 424 IPR015421 GO:0003824
Trre13g04060 530 Pfam Pyridoxal-dependent decarboxylase conserved domain 85 458 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre13g04060 530 SUPERFAMILY PLP-dependent transferases 51 524 IPR015424 -
Trre13g04060 530 CDD DOPA_deC_like 126 521 - -
Trre13g04060 530 FunFam Histidine decarboxylase 51 131 - -
Trre13g04060 530 Gene3D - 46 131 - -
Trre13g04060 530 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 341 362 IPR021115 GO:0016831
Trre13g04060 530 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 47 528 - -
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 188 208 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 97 116 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 144 162 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 163 182 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 397 412 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 56 75 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 123 142 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 440 459 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 PRINTS Aromatic-L-amino-acid decarboxylase signature 79 96 IPR010977 GO:0006520|GO:0016831
Trre13g04060 530 FunFam Histidine decarboxylase 132 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04060 Trre-Chr13 48511292 48515798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04060 K01593 - gmx:100791074 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04060 13 48511292 48515798 Trre13g04060 13 48511292 48515798 ECH