Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04042 ATGTTGCTAAGAAGTTCATCAACACCAGTTCTTGGTTCTCTCCTATCTTCAAGTTCCTTCACAGATAGTCCTATTCATCATAGTCATACTCTTCATCCTGAATCATGTCATGCACTTAAGCATCTACCACTCCAACATCATCATCACAGTAACAAGATCTCATGCAGTTCTTCTCCAATCTCACCTTCAATTTATGATCTTGAAAGGCAAAAGAAAGGGTTGATTAGAAGAGTTCAATCTGAAGGGAACTTGGAAGACTTAGCCTTTTCTACTTGCAACAATAACAATGAAGACAGATTCAATTATATGGACTCTTCTTCTAAGAGGTATCCAGTGAGGCGAAGATCGTTAGCACTTGAGACCATTCCATCTTTCTCTCTTTCTAAGCATACAGGTTTGCGCGAAGAAGAAGAAGATGAAGACGAGGAAAGTGATATTGAAGATGAAGGTTATGAGTTCAGTATGCTGAATAGTAGCAGTGGTATGATGCAGACTGAAGAAGTGAAGGTGATTGATAGAGTTTGCAAGGTGAGTTTTGGTAATAAAGAGATGTATCTTGCAAAAGGTCTTGGTGTTGATGTGAGTGGTGATGGCATAGATGGTGGGTGCAGAGGAGGCAATGGAGGTGGTGATTATAGTTCCATGGGATCTCGAGGGAATGATGGAGATAGTAATCATAAAGTGGAAGAATACTACAAGAAAATGGTGCAGCAAAATCCTGGGAACTCATTGTTTCTGAGGAATTATGCTCAGTTTTTGTATCAGAGCAAAAAAGACCGTGAAGGCGCAGAGGAGTATTATTCCAGAGCCATACTAGCAGATCCAAATGATGGAGAAGTTCTATCACAGTATGGAAAACTAGTTTGGGAGCTACATCATGATGAAGAAAGAGCCACTAGCTATTTTGAAAGAGCAGTACAAGCTTCTCCTGATGACAGCCATGTACAAGCAGCATATGCAAGTTTTCTGTGGGACACAGAGGAAGATGAAGATGCAAGTTCCAATGACCCACAAAGTTTACCTCAGCATTTTCATTTTGGAGCTATGGCTACTACAAGTGCATAG 1065 0.4047 MLLRSSSTPVLGSLLSSSSFTDSPIHHSHTLHPESCHALKHLPLQHHHHSNKISCSSSPISPSIYDLERQKKGLIRRVQSEGNLEDLAFSTCNNNNEDRFNYMDSSSKRYPVRRRSLALETIPSFSLSKHTGLREEEEDEDEESDIEDEGYEFSMLNSSSGMMQTEEVKVIDRVCKVSFGNKEMYLAKGLGVDVSGDGIDGGCRGGNGGGDYSSMGSRGNDGDSNHKVEEYYKKMVQQNPGNSLFLRNYAQFLYQSKKDREGAEEYYSRAILADPNDGEVLSQYGKLVWELHHDEERATSYFERAVQASPDDSHVQAAYASFLWDTEEDEDASSNDPQSLPQHFHFGAMATTSA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04042 354 SMART hat_new_1 258 290 IPR003107 GO:0006396
Trre13g04042 354 SMART hat_new_1 293 325 IPR003107 GO:0006396
Trre13g04042 354 SMART hat_new_1 223 255 IPR003107 GO:0006396
Trre13g04042 354 MobiDBLite consensus disorder prediction 335 354 - -
Trre13g04042 354 Gene3D Tetratricopeptide repeat domain 217 335 IPR011990 GO:0005515
Trre13g04042 354 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 333 - -
Trre13g04042 354 MobiDBLite consensus disorder prediction 326 354 - -
Trre13g04042 354 MobiDBLite consensus disorder prediction 128 149 - -
Trre13g04042 354 SUPERFAMILY TPR-like 228 332 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04042 Trre-Chr13 48405469 48406857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04042 - - gmx:100788436 400.979