Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04041 ATGGCGTCTTCATATCCGGGTTCCGTTAGTGCTGCTCAGGTTGGTTCTTACTTCGTTGGACAGTACTATCAAGTTCTTCGTCAACAACCTGATCTTGTTTATCAGTTTTACTCTGATTCCAGCTCCATGATTCGTGTTGATGGTGATTATTCTGAGACTGCATCTGATATGTTGCATATTCATAATATCGTGACATCGCTGAATTTTGCGACAATTGAGATCAAGACGATCAATTCTCTTGACTCTTGGAATGGAGGAGTGATTGTAATGGTTACGGGTGTTGTTAAGATCAAGGATGTCAACGGGAAGCAGAAGTTTGTTCAGACTTTCTTCCTTGCGCCTCAGGAGAAGGGTTATTTTGTGCTCAATGATATATTTCAATACGTTCATGAGGAAGTAGTGCATCCAAATCTGGTACCGGTGACATCTGAAAGGATTGACTCACAGCCACATGTGTCTGCTGCGTTTGCTGAGCCACCAGCTTCAGACTACGGTTTTGAGGAAGAAGCAAGGGAATATGTCAACTCAGTTCGTATAGACGATGATCCAGTGGACAAGTATAGTCTCCCTGAGCAGCAGCAGCAACTACAAGATGATTTTGAGTCTGAAGTTGTGGTGGAGGAAGCTCCGGCACAGGAGGCATCTCCACAGATTTACAGTGTTGCACAAACTATCCGCGAAACCCCTGTTGCTCCTGTTGAAGAGCCGTATGAGGAGCCTGCTAAGAAAACTTACGCATCTATTTTACGTGTCTCCAAAGGCCAATCAGTGGTGTCCGCTGCACCACAACATGCCCCACAGCATTCTTTTAAAAGTGCTCCTCCTCCTTCCGATTTTAATCATGTCACACAGCCTGCTGTTCAGCAGTCAGCGGTGCAGCCTGCTTTTCAGCAGTCAAGCTCAGCATCATATGTTTCAGACTCCGGGGCTGAGGCAACAGAAGAAGGCTACAAATTTGAAGAAGAAGAAGTAACGTCTGTCTATGTGAGAAACCTGCCTGGTGATATTACCGAAGCGGAGATTGAGGAGGAGTTTAAGGGTTTCGGCAGAATTAAGCCAGATGGAATATTCGTAAGGGTCCGACAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTCGAAGACGTTGTTGGGGTTCAAAATGCACTTCAGGCTTCTCCCATACAATTGGCTGGAAGACAAATATACATAGAGGAGCGAAGACCAAGCAGCAGCGGTGCAGCTCGAGGAGGAAGAGGAAGGGGAAGAGGCAGAGGCGGTTATCCAACGGATGCTCCAAGGGGGCGTTTTGGTGGCAGGAGCTCGGGAAGGGGTTATTATCAGGATACCTCAGACTATACCAGGAGCTCTGGAAGAGGTGATGGTTATCTTCAGCGCGGTTCACGATAG 1389 0.4672 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPDLVYQFYSDSSSMIRVDGDYSETASDMLHIHNIVTSLNFATIEIKTINSLDSWNGGVIVMVTGVVKIKDVNGKQKFVQTFFLAPQEKGYFVLNDIFQYVHEEVVHPNLVPVTSERIDSQPHVSAAFAEPPASDYGFEEEAREYVNSVRIDDDPVDKYSLPEQQQQLQDDFESEVVVEEAPAQEASPQIYSVAQTIRETPVAPVEEPYEEPAKKTYASILRVSKGQSVVSAAPQHAPQHSFKSAPPPSDFNHVTQPAVQQSAVQPAFQQSSSASYVSDSGAEATEEGYKFEEEEVTSVYVRNLPGDITEAEIEEEFKGFGRIKPDGIFVRVRQEIGVCYAFVEFEDVVGVQNALQASPIQLAGRQIYIEERRPSSSGAARGGRGRGRGRGGYPTDAPRGRFGGRSSGRGYYQDTSDYTRSSGRGDGYLQRGSR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04041 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
Trre13g04041 462 CDD RRM_SF 327 398 - -
Trre13g04041 462 FunFam Nuclear transport factor 2 family protein 5 132 - -
Trre13g04041 462 SUPERFAMILY RNA-binding domain, RBD 320 432 IPR035979 GO:0003676
Trre13g04041 462 Gene3D - 5 133 - -
Trre13g04041 462 MobiDBLite consensus disorder prediction 401 462 - -
Trre13g04041 462 CDD NTF2 10 129 IPR018222 -
Trre13g04041 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 395 IPR000504 GO:0003723
Trre13g04041 462 FunFam Nuclear transport factor 2 family protein 315 456 - -
Trre13g04041 462 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Trre13g04041 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Trre13g04041 462 Gene3D - 297 457 IPR012677 -
Trre13g04041 462 MobiDBLite consensus disorder prediction 437 456 - -
Trre13g04041 462 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Trre13g04041 462 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 451 IPR039539 -
Trre13g04041 462 SMART rrm1_1 326 398 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04041 Trre-Chr13 48399533 48404088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04041 - - cam:101501784 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04041 13 48399533 48404088 Trre13g04041 13 48399533 48404088 ECH