Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04040 ATGGGGGATAGTGAAACAATGGTTACGGAAACATCTGCTGCTGAGACGTATCCATCGGATGGTTACAATAACACCACCGCTTCGAATCCGGTTCCCGAGGCGGCTGCTGCTCCTCCTGCTGAGGTTGCAGGAGAAGCTGGTGTTCAGGATAATTCAAGCTACGAGTTAGGTTATTCTGGTGATGGGAATGCTTATACTGCTGGGGATCCTAATTCTGTACTTCAACAAGCTCAGTTCAGTGCAACAAATGAGTCCAAGCAAGCTGCTGGAGCGCCTGATGCTAACTCGGGTGCGGTTGGAAATGAAGCTACGGATTCTACTATGGTTTCTGGTGAACATTTGTCTGTAAATGGCGGTGTTGATACAGCTGGACTTGAAAATGGAAATGCATTGGAGCATGTTGATGGGTCAGCTGATGAGAAACAGCTTACAGATGCTTACGCTGCTTTGTCCGCTGAAGAGGATAGGCTGTGGAATATTGTAACAGCTAATTCTTCAGATTTTACTGCTTGGACCTCTTTGATAGAAGAGACTGAAAAGTTGGCAGAGAACAACATTTTGAAGATTCGTAGAGTCTATGATGCTTTCCTAGCAGAATTCCCTTTGTGTTATGGGTATTGGAAAAAATATGCTGACCATGAGGCGCGCATTGGCACTGCTGATAAAGTTGTTGAAGTTTATGAACGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTACATTATTGCATATTTGCCATAAGCACCTATGGAGATCCAGAGACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCCTTTCCTCTTTGGGATAAATACATTGAATATGAGTATATGCAACAAGACTGGGCCCGCCTTGCGATGATTTACACCAGAATATTAGAGAATCCAAATCAGCAGTTGGATCGGTATTTCAACAGCTTTAAGGAGTTGGCTAGTAATCGGCCTTTGTCAGAATTACGGACAACTGATGAAGCTGCTGCAGTGGCAGGTGTTGTTTCAGAGGGTACCGACCAAGGTGTTGAAGGGGAGGTCCGTCCTGATGGTGCGGAGAGTTCTCCTAAACCTGCAAGTGCAGGATTAACAGAAGCAGAAGAGCTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGGCCTCTTAATGTTGGGGAGCTTGAGAATTGGCATAACTATCTGGACTTAATAGAAAGAGAAGGTGACTTGAGTAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCCTGTGCCAATTATCCCGAGTACTGGATACGTTATGTTTTATGTATGGAAGCTAGTGAAAGTTTGGATCTTGCAAATAATGTTCTAGCCCGGGCAAGCCAAGTCTTTGTCAAGAGACAACCTGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAAGCTAGAGATATAGTGGGTGCTAGAGCTGCATATCAACTTGTGCACACTGAAATTTCTCCAGGTCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAACATCGATTGGGGAAGTTGGAGGATGCCTTCTCTTTGTATGAACAAGCCATTGCCATTGAAAAAGGGAAAGAACATTCACAAACACTGCCAATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGGGAATGCAGAAAAGGCTAGAGAGGTTTTAGTTGGGGGGCTTGAGAATGCTTCCCTATCAAAGCCACTTCTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCCCAGCCAAAGCGAGTTAACATTGACTTTCTAGAGTCATTGGTTGTAAAATTCATAACGCCTAACCCAGAGAACCCTGGTGTAGCAAGTGCAACAGAGCGCGAGGAACTTTCTTCTATTTTTCTAGAGTTTTTGAATCTCTTTGGAGACGTTAAAGCTATCAAAAGGGGTGAGGATAGACATGCCAAACTGTTCTTGCCGCACAGGAGCTTGTCGGAGTTGAAAAAACGTCATGCAGAGGATTTCCTAGCTTCAGATAAAACAAAAGTTGCGAGAGCTTATTCTGCTCAATCACCTGCCCAATCTGTAATCGGTGCATATCCAAATGCACCTAACCAATGGACTAACTATGGAGTACAGCCACAGACTTGGCCAGCGACAACACAAGCACAAGGACAACAATGGCCTGCTGGCTACACCCAGCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGAGGTAACTATGCTAACCCACAATTGCCCGCATCAGTCCCACCAAGCACTGCTTATGGAGCTTATCCTCCTGCATATCCTGCACAGCCGGCTCTGCCTCAACAAAATTATGCACAACCTGTTGCAGCCCCGACACAGCAACCTGCAGCAGTTCCTCAGGCCTATTACGGGAGTTACTACTGA 2472 0.4454 MGDSETMVTETSAAETYPSDGYNNTTASNPVPEAAAAPPAEVAGEAGVQDNSSYELGYSGDGNAYTAGDPNSVLQQAQFSATNESKQAAGAPDANSGAVGNEATDSTMVSGEHLSVNGGVDTAGLENGNALEHVDGSADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSLIEETEKLAENNILKIRRVYDAFLAEFPLCYGYWKKYADHEARIGTADKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPETVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTTDEAAAVAGVVSEGTDQGVEGEVRPDGAESSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDLIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASESLDLANNVLARASQVFVKRQPEIHLFCARFKEQARDIVGARAAYQLVHTEISPGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKAREVLVGGLENASLSKPLLEALLHFEAIQPQPKRVNIDFLESLVVKFITPNPENPGVASATEREELSSIFLEFLNLFGDVKAIKRGEDRHAKLFLPHRSLSELKKRHAEDFLASDKTKVARAYSAQSPAQSVIGAYPNAPNQWTNYGVQPQTWPATTQAQGQQWPAGYTQQQASYGAYAGYGGNYANPQLPASVPPSTAYGAYPPAYPAQPALPQQNYAQPVAAPTQQPAAVPQAYYGSYY 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04040 823 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 412 704 - -
Trre13g04040 823 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g04040 823 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 138 812 - -
Trre13g04040 823 SUPERFAMILY TPR-like 161 682 IPR011990 GO:0005515
Trre13g04040 823 Gene3D Tetratricopeptide repeat domain 413 711 IPR011990 GO:0005515
Trre13g04040 823 MobiDBLite consensus disorder prediction 52 90 - -
Trre13g04040 823 Gene3D Tetratricopeptide repeat domain 159 328 IPR011990 GO:0005515
Trre13g04040 823 MobiDBLite consensus disorder prediction 346 369 - -
Trre13g04040 823 SMART hat_new_1 537 572 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 433 465 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 290 323 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 218 250 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 184 216 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 578 610 IPR003107 GO:0006396
Trre13g04040 823 SMART hat_new_1 253 288 IPR003107 GO:0006396
Trre13g04040 823 FunFam Putative pre-mrna-processing factor 39 159 329 - -
Trre13g04040 823 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04040 Trre-Chr13 48388891 48396503 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04040 K13217 - gmx:100787373 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04040 13 48388891 48396503 Trre13g04040 13 48388891 48396503 ECH