Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04000 ATGGCTGCAAGCGCAGGTCTATACCGGAGAACCCTCCCTCCTCCTTCAATCGAATTTGCTTCGCCGGAAGGCAAACAAATCTTTACCGAAGCTCTTCAGAATGGAACAATGGAAGGCTTCTTCAAATTGATTTCTTATTATCAGACTCAATCAGATCCTGCTTTCTGTGGTTTAGCCACTCTTTCTGTTGTCCTCAATGCTCTTGCTATTGACCCTGGTAGAAAATGGAAAGGTCCTTGGAGATGGTTTGATGATTCTATGTTGGATTGCTGTGAGCCTTTGGACAAGATTAAATCACAAGGAATTACATTCGGAAAAGTTGTGTGCTTGGCTCGATGCAATGGAGCTAAAGTTGAAGACTTTCGATCAGATCAGAGCAACATTGATGATTTTCGCAGCCGTGTGATTTCGTGTTCTTCTTCTGAGGATTGTCATGTCATTGTGTCTTACCAAAGGACTCAACTCAATCAGACTGGGATTGGGCATTTTTCACCTCTTGGAGGATACCATGCTGAAAGGGATATGGTCCTTATATTGGATGTTGCTCGATTCAAATATCCACCTCACTGGGTTCCTGTTACCGCTCTTTGGAATGCACTGAAAACCATTGATCAAGCAACTGGACAACATAGGGGGTACATGATTATTTCAAGGCTTAACAGGGCACCATCAATACTTTATACTGTGAGTTGTAGACATGAAGGTTGGAGCAGTGTTGCCAAATATCTAACTGAAGACGTCCCTCTTCTTCTAAAATCCGAGGATCTAAAAGACATTCAGGAAGTATTCTCTGTTGCATTTAAATCTCCTCCTACTGAATTAAGAGAGTTTATCACTTGGATTGCTGAGGTTCGCAGGCAAGAAGATGGGAATCTCACGTTGAGCGAGGAGGAGAAAGGAAGGCTGGCTATCAAGGCAGATGTACTGGAACAAATTCGATCAACTGCACTCTTCAAACATGTGACCAGGTGGTTGGATTCAGAAAGGTCATGTTGCGATTCCATTGCAAGCTTTGGTGACAAAGATAAGTTATCAGCACTTGCGGCACGTGTTTGCTGCCAAGGGGCAGATCTCTTGTCTGGTTGTCGTTTGTCAGGTTCAAAATGCTGTAGTCAAATAGATGTAAAACATCTGAATGTTGATAGTGAAAATCCAGTAACAATGTTTTCCGGAACCGTTATAACTGGGGGCAGTAGTGAACAAGAAGTTGATGTGTTGGTCCCTCTGTGTCAAAGGAAGCCGAATAGCTTGTGTCTTTGTAATGAAGGTCAGTGCATTGGAATGCACCCATCCACTGCAGATGTCTTGACAGTGCTTATATTCGCCTTGCCGTTGCATACATGGTCAGGCATCAAAGAAGAAAAGCTGCGTGTGGAAGTTGCAAGCCTTCTAAAAACCGAAGATCTCCTTCCCTTACTTTCAGAAGAGGTTTTGTTTTTGCGAGAGCAACTTCACTCTCTCATGACTGATAATGGTGCACCTTCTAACCTATGA 1494 0.4324 MAASAGLYRRTLPPPSIEFASPEGKQIFTEALQNGTMEGFFKLISYYQTQSDPAFCGLATLSVVLNALAIDPGRKWKGPWRWFDDSMLDCCEPLDKIKSQGITFGKVVCLARCNGAKVEDFRSDQSNIDDFRSRVISCSSSEDCHVIVSYQRTQLNQTGIGHFSPLGGYHAERDMVLILDVARFKYPPHWVPVTALWNALKTIDQATGQHRGYMIISRLNRAPSILYTVSCRHEGWSSVAKYLTEDVPLLLKSEDLKDIQEVFSVAFKSPPTELREFITWIAEVRRQEDGNLTLSEEEKGRLAIKADVLEQIRSTALFKHVTRWLDSERSCCDSIASFGDKDKLSALAARVCCQGADLLSGCRLSGSKCCSQIDVKHLNVDSENPVTMFSGTVITGGSSEQEVDVLVPLCQRKPNSLCLCNEGQCIGMHPSTADVLTVLIFALPLHTWSGIKEEKLRVEVASLLKTEDLLPLLSEEVLFLREQLHSLMTDNGAPSNL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04000 497 Pfam Domain of unknown function (DUF1984) 231 484 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Trre13g04000 497 FunFam Glutathione gamma-glutamylcysteinyltransferase 1 15 220 - -
Trre13g04000 497 Gene3D - 16 221 IPR038156 -
Trre13g04000 497 SUPERFAMILY Cysteine proteinases 12 217 IPR038765 -
Trre13g04000 497 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 2 221 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Trre13g04000 497 Pfam Phytochelatin synthase 8 213 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Trre13g04000 497 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 5 483 IPR040409 GO:0016756|GO:0046872|GO:0046938
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04000 Trre-Chr13 48133930 48138421 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04000 K05941 K17756 gmx:100782042 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04000 13 48133930 48138421 Trre13g04000 13 48133930 48138421 ECH