Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03989 ATGAAAGAAGGTGTGATAGGAGAAATACGGGTTCCTCGCCTCCATCTTAGGTTTCTTTCCTCTGTTTTTCAACAAGTTACAAGTTTTCAGTTAACCATGTATCTTCAATTCTATATCAACGATAACGGTGACAAGGTTTACACTACTAAGAAAGAGTCACCAACTGGGTTGGCTACTCAATCTGCTCATCCAGCCCGGTTTTCACCTGATGACAAGTTTTCAAGGGAGAGAATTCTGCTGAAGAAGCGATTTGGATTGTTACCAACTCAACATCCAGCTCCAAAATACTGA 291 0.4089 MKEGVIGEIRVPRLHLRFLSSVFQQVTSFQLTMYLQFYINDNGDKVYTTKKESPTGLATQSAHPARFSPDDKFSRERILLKKRFGLLPTQHPAPKY 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03989 96 Pfam Nucleolar RNA-binding protein, Nop10p family 35 84 IPR007264 GO:0001522|GO:0030515|GO:0042254
Trre13g03989 96 PANTHER RIBOSOME BIOGENESIS PROTEIN NOP10 33 96 IPR007264 GO:0001522|GO:0030515|GO:0042254
Trre13g03989 96 SUPERFAMILY Nop10-like SnoRNP 35 90 IPR036756 GO:0001522|GO:0030515|GO:0042254
Trre13g03989 96 Gene3D H/ACA ribonucleoprotein complex, subunit Nop10 42 86 - -
Trre13g03989 96 FunFam H/ACA ribonucleoprotein complex subunit 3 42 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03989 Trre-Chr13 48049556 48050806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03989 K11130 - aof:109827796 127.872