Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03981 ATGGGTTCTCTACCAGCATTTCCAAACGAGCATTCTCCCAAACAAACCATCAACGGCCTAATTGACGAAACTACCCTCGTCGATCTCTTCAAATCCCAACAAAACCATCTCAACTTCTTCTTCGACCGCATCGACCATTCCCAAACCCTATCATTCACACGCGCTCTCCTCAACTCCACCGGCACCGTTTTCTTCACCGGAGTAGGCAAATCTGGTTTCGTCGCTCACAAGATCTCTCAAACACTCGTCTCTCTCGGCATCCGTTCATCTTTCCTCTCCCCCGTCGACGCTCTCCACGGCGACATCGGAATCCTCAGTGATCGCGATGTACTCGTTCTCCTCAGCAAATCTGGCGCCACTGAGGAACTTCTGCGTCTTGTTCCATGTGCTAAAGCTAAAGGCGCGATGCTCATCGCTGTTACCTCCGTTGAAGGTAACGCACTTTCTGCGGTGTGTGATATGACCGTGCATTTGCCTTTGGAGAGAGAGCTTTGTCCTTTTAACCTTGCTCCGGTTACTTCGACTGCGATTCAAATGGTTTTTGGTGATACTGTTGCAATTGCGCTCATGGCTGCACGAAATCTCACTAAGGATGAATACGCCGCTAATCATCCTGCTGGTAAAATCGGAAAGAGCCTCATCTTTAAGGTAAGAGATGTGATGAAGAAGGATGAGGAGCTTCCAATTTGTAAGGAATCTGATTTGATTATGGATCAGCTTGTGGAGCTGACGAGTAAAGGATGTGGATGCTTGCTTGTTATAGATGGTGATCGCCGTCTGATTGGGACATTTACTGATGGTGATCTGCGTCGTACGCTCAAAGCTAGTGGTGAAGCAATTTTCAAACTCACTGTAGGGAAAATGTGCAACAGGAATCCGAGAACTATTGGTCCAGAGGCTATGGCAGTGGATGCCATGAAGAAGATGGAAGCACCTCCATCACCAGTCCAATTTTTGCCTGTGATAGATGATGACAATGTCGTGATTGGGATTGTCACGTTGCATGGTTTGGTTTCAGCTGGGTTATGA 1029 0.4762 MGSLPAFPNEHSPKQTINGLIDETTLVDLFKSQQNHLNFFFDRIDHSQTLSFTRALLNSTGTVFFTGVGKSGFVAHKISQTLVSLGIRSSFLSPVDALHGDIGILSDRDVLVLLSKSGATEELLRLVPCAKAKGAMLIAVTSVEGNALSAVCDMTVHLPLERELCPFNLAPVTSTAIQMVFGDTVAIALMAARNLTKDEYAANHPAGKIGKSLIFKVRDVMKKDEELPICKESDLIMDQLVELTSKGCGCLLVIDGDRRLIGTFTDGDLRRTLKASGEAIFKLTVGKMCNRNPRTIGPEAMAVDAMKKMEAPPSPVQFLPVIDDDNVVIGIVTLHGLVSAGL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03981 342 PANTHER - 1 342 - -
Trre13g03981 342 NCBIfam KpsF/GutQ family sugar-phosphate isomerase 61 332 IPR004800 GO:0005975|GO:0016853
Trre13g03981 342 Gene3D - 212 340 IPR046342 -
Trre13g03981 342 CDD CBS_pair_SIS_assoc 213 338 - -
Trre13g03981 342 ProSiteProfiles CBS domain profile. 221 280 IPR000644 -
Trre13g03981 342 SUPERFAMILY SIS domain 29 341 IPR046348 GO:0097367|GO:1901135
Trre13g03981 342 SMART cbs_1 226 274 IPR000644 -
Trre13g03981 342 SMART cbs_1 292 342 IPR000644 -
Trre13g03981 342 ProSiteProfiles CBS domain profile. 289 342 IPR000644 -
Trre13g03981 342 CDD SIS_Kpsf 61 188 IPR035474 -
Trre13g03981 342 Pfam SIS domain 57 187 IPR001347 GO:0097367|GO:1901135
Trre13g03981 342 ProSiteProfiles SIS domain profile. 52 195 IPR001347 GO:0097367|GO:1901135
Trre13g03981 342 Pfam CBS domain 217 274 IPR000644 -
Trre13g03981 342 Pfam CBS domain 285 340 IPR000644 -
Trre13g03981 342 Gene3D - 23 211 - -
Trre13g03981 342 PIRSF KdsD_KpsF 10 342 IPR004800 GO:0005975|GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03981 Trre-Chr13 47964786 47966496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03981 K06041 - gmx:100805755 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03981 13 47964786 47966496 Trre13g03981 13 47964786 47966496 ECH