Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03977 ATGGACAAATCCAAGCTAGCTCTATTCGGCGAGAAGCTCAAAACCAGTAGCGCCAACATGAGTCGAATCGTAAGCGGAAAAATGAAGGAAATACTCCAAACACCGACGCCGGAATCAAAGATGGTAGACGAAGCAACATCGGAAACATTAGAGGAGCCAAATTGGGGTATGAATCTGAGAATCTGTGGACTTATAAACGCTGATGAGTTTAACGGTTCTGAAGTGGTGAAAACTATCAAGAGAAAGATTAATCATAAGAGTCCTGTTGTTCAGAAACATAGTCTTGATTTGTTGGAAACTTGTGCTATGAATTGTGAAAAAGTTTTTTCTGAAATTGCTTCTGAGAAGCTTTTAGATGATATGGTTAGGTTGATTGAGAATAATCAAGCTGATCAGGAAAATAGAAGAAGGGCTTTACAGTTGATTAGGGCTTGGGGTGAGTCTGAGGATATTGCTTATCTTCCTGTTTTCAGTCAAACTTATATGAGTTTGAAAGGAAGGGGTGAAACACTTGACACGGCTGGAGGGAATTCACCACCTATTCCATATGCTTCAGAGTCACTTGCTTATCAACATCCTTTAGATCCCCCAGAAAGATACCCAGTTCCAGAAGCAGGGCTACACGCTCTTTCTCTGGATGAGTCTGCAGCCTTCTTTACTGATCACCAACCAGCATCAGTTGAAGAGAAAAAAGAGCATCTCGTGGTTGCTCGAAACAGTCTTGAATTACTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTAAAGGAAGATATAACTTTGAGTCTATTGGATAAGTGCAAGCAGTCACTCTCTGTTATCAAGGAGATTGTGGAAAGCACCACAAATGATGAAGAGACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAACAGTTGGTTTCTAAGTATGAGGAGTTGGAAGCTTCTCAAAGGCCAGGTGTACAGGAGACACCAATTGCTGACACTGCCAAGAATGACGCCGGAGCTGTTCAAAATCCCAATGAAAGATTTGAAGGTGATGAATCTGAAGAGACAGAGGCTGCTCAGGATCTTGATCGAAAGCTGCCCCAAAAGTCAAATACTCCTGAAGTTAATGTCAATGCAACTGAGGTGGATAGTCATGTTGAAACCAAAATAGTGGATAGCACAAAAGAGAAGAATGGAGAACCAAGCCTCAAGAGTAATACCGAATGA 1206 0.4138 MDKSKLALFGEKLKTSSANMSRIVSGKMKEILQTPTPESKMVDEATSETLEEPNWGMNLRICGLINADEFNGSEVVKTIKRKINHKSPVVQKHSLDLLETCAMNCEKVFSEIASEKLLDDMVRLIENNQADQENRRRALQLIRAWGESEDIAYLPVFSQTYMSLKGRGETLDTAGGNSPPIPYASESLAYQHPLDPPERYPVPEAGLHALSLDESAAFFTDHQPASVEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDITLSLLDKCKQSLSVIKEIVESTTNDEETLFEALYLNDELQQLVSKYEELEASQRPGVQETPIADTAKNDAGAVQNPNERFEGDESEETEAAQDLDRKLPQKSNTPEVNVNATEVDSHVETKIVDSTKEKNGEPSLKSNTE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03977 401 SUPERFAMILY GAT-like domain 188 311 - -
Trre13g03977 401 ProSiteProfiles GAT domain profile. 187 312 IPR004152 GO:0035091|GO:0043130
Trre13g03977 401 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Trre13g03977 401 Pfam GAT domain 238 311 IPR004152 GO:0035091|GO:0043130
Trre13g03977 401 MobiDBLite consensus disorder prediction 311 401 - -
Trre13g03977 401 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Trre13g03977 401 MobiDBLite consensus disorder prediction 378 395 - -
Trre13g03977 401 Gene3D - 28 180 IPR008942 -
Trre13g03977 401 PANTHER TOM1-LIKE PROTEIN 1 1 384 IPR044836 GO:0035091|GO:0043130|GO:0043328
Trre13g03977 401 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Trre13g03977 401 CDD VHS 39 165 - -
Trre13g03977 401 Coils Coil 293 313 - -
Trre13g03977 401 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Trre13g03977 401 Gene3D - 214 315 IPR038425 -
Trre13g03977 401 MobiDBLite consensus disorder prediction 362 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03977 Trre-Chr13 47903290 47908050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03977 - - mtr:25499268 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03977 13 47903290 47908050 Trre13g03977 13 47903290 47908050 ECH