Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03920 ATGGCCATTGCATTGAAATCATTTTGCTTCTTACACTTGAAGAAACCTAAAACCGATTTTCGGGTCGGTTATCCTTCCAAGAAAGCTACAATAATCTCAGTTAAAAGATACACTTCAGTGTCTGCTAGTGCTACCAGAACCAGTGAAGCAGTAAGCATCTCTGAAACATTCAACAAGCTGAAGAAACAAGGAAAAGTGGCATTAATTCCATACATCACAGCTGGTGATCCTGATCTTTCAACCACAGTAGAAGCATTGAAAGTTCTTGATTCATGTGGATCTGACATTATTGAGCTCGGTGTTCCTTACTCCGATCCTTTGGCAGATGGTCCTGTTATTCAGGCTGCTTCAACAAGATCTTTATCAAGAGGGACCAATTTTGATTCAATTATTTCAATGTTGAAGGAGGTAGTTCCAGAATTATCTACTCCAATTGCATTGTTTACTTATTACAATCCAATACTGAAGCGTGGTACCGAGAGATTTATGTCCATTGTAAGAGACACTGGTGTTCATGGGCTTGTAGTCCCTGATGTTCCTCTGGAGGAGACACAAATTTTAAGGACAGAAGCTAAGAAGAAAGGAATTGAACTTGTACTTCTCACGACACCTACCACTCCGGCAAACCGAATGAAAGCCATTGTTGATGGCGCAGAAGGATTCGTGTATCTTGTGAGCTCTTTGGGCGTCACCGGAACTCGAGCATCAATTAGTAGTAAAGTTCAAGCTCTTCTCAAGGAAATCAAAGAGGCATCAAGTAAGCCTGTTGCAGTAGGATTTGGGATATCAACAGCTGAGCAGGTGAAGCAGGTGGCGGGATGGGGAGCTGATGGTGTGATTGTTGGAAGTGCTATGGTGAAGTTGCTTGGTGAGGCCAAAACTCCTCAAGAGGGATTGAAGGAACTGGAAAATTTCACCCTCTCCTTAAGATCAGCACTTGATTGA 945 0.4243 MAIALKSFCFLHLKKPKTDFRVGYPSKKATIISVKRYTSVSASATRTSEAVSISETFNKLKKQGKVALIPYITAGDPDLSTTVEALKVLDSCGSDIIELGVPYSDPLADGPVIQAASTRSLSRGTNFDSIISMLKEVVPELSTPIALFTYYNPILKRGTERFMSIVRDTGVHGLVVPDVPLEETQILRTEAKKKGIELVLLTTPTTPANRMKAIVDGAEGFVYLVSSLGVTGTRASISSKVQALLKEIKEASSKPVAVGFGISTAEQVKQVAGWGADGVIVGSAMVKLLGEAKTPQEGLKELENFTLSLRSALD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03920 314 Hamap Tryptophan synthase alpha chain [trpA]. 63 312 IPR002028 GO:0004834|GO:0006568
Trre13g03920 314 Gene3D Aldolase class I 51 314 IPR013785 -
Trre13g03920 314 ProSitePatterns Tryptophan synthase alpha chain signature. 97 110 IPR018204 GO:0004834
Trre13g03920 314 NCBIfam tryptophan synthase subunit alpha 57 309 IPR002028 GO:0004834|GO:0006568
Trre13g03920 314 Coils Coil 234 254 - -
Trre13g03920 314 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 45 313 IPR002028 GO:0004834|GO:0006568
Trre13g03920 314 FunFam Tryptophan synthase alpha chain, chloroplastic 51 314 - -
Trre13g03920 314 SUPERFAMILY Ribulose-phoshate binding barrel 53 293 IPR011060 -
Trre13g03920 314 Pfam Tryptophan synthase alpha chain 57 307 IPR002028 GO:0004834|GO:0006568
Trre13g03920 314 CDD Tryptophan_synthase_alpha 67 310 IPR002028 GO:0004834|GO:0006568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03920 Trre-Chr13 47326065 47328083 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03920 K01695 - gmx:100808400 473.011