Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03876 ATGGATCATGATATATTTTGGAGTTCAGATCATCCCGGAATTGATTTCACCGTGACATCTCCGGGCGGAAATGTGGTGCACTCTTTGAAGGGAACATCAGGGGACAAGTTTGAGTTCAAAGCCACAAAAAGTGGAATTTACAAATTCTGCTTTCATAATCCTATTACTACACCAGAAACTGTGTCCTTTTATGTTCATGTTGGCCACATTCCAAATGAACATGACTTAGCTAAAGAAGAGCATTTGGATCCAATTAATGTGAAGATTGCTGAGTTAAGAGAAGCATTAGAATCTATTATAACAGAACAAAAGTACTTGAAAGCACGCGATGCTAGACATCGAAATACAAATGAGAGCACCAGAAAACGTGTCGTATTTTATACACTAATGGAATATATTTTATTCGTTACTACAAGTATATTGCAAGTGGTATACATTCGTCGTCTCTTCAGCAAATCATTTGCTTACAATCGGGTGTAG 480 0.3729 MDHDIFWSSDHPGIDFTVTSPGGNVVHSLKGTSGDKFEFKATKSGIYKFCFHNPITTPETVSFYVHVGHIPNEHDLAKEEHLDPINVKIAELREALESIITEQKYLKARDARHRNTNESTRKRVVFYTLMEYILFVTTSILQVVYIRRLFSKSFAYNRV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03876 159 Pfam emp24/gp25L/p24 family/GOLD 11 150 IPR009038 -
Trre13g03876 159 ProSiteProfiles GOLD domain profile. 1 67 IPR009038 -
Trre13g03876 159 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 7 152 IPR015720 -
Trre13g03876 159 SMART EMP24_GP25L_2 1 151 IPR009038 -
Trre13g03876 159 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 7 75 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03876 Trre-Chr13 46942601 46943736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03876 K20347 - gmx:100789501 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03876 13 46942601 46943736 Trre13g03876 13 46942601 46943736 ECH