Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03833 ATGTCGTCGTCGTCGTCTCTGATATCGGATTTTCTCCATCAAACTGGCGGAACTGCCATCATCGACGGTGGTTTAGCGACTGAGCTTGAACGTCACGGCGCAGACCTTAACGATCCCCTTTGGAGCGCCAAATGCCTCATTTCTACTCCTCAGTCTAACCTCATTCGCCAGGTGCATCTTGATTATTTGGAAAATGGTGCTGACATTATAACCACAGCATCTTATCAAGCTACTATTCAAGGTTTTAAGGAAAAAGGATTTTCTAATGAAGAAGGTGAAAACATGCTAAGAAGAAGTGTTGAAATTGCTTGCGAGGCTCGCGATTTGTATTATGAAAGATGTGCTGCGTCCTCTTCGGGTGATAAGACTGATGGTAGAATCCTCAAGAAACGTACTATTCTGATTGCAGCATCAGTTGGGAGCTATGGAGCTTATTTGGCTGATGGATCAGAGTACAGTGGGGTTTATGGTGATGCTATCACATTGGCAACTCTCAAAGATTTTCATCGAAGAAGAGTTCAAGTTTTGGCAGATTCAGGTGCAGACCTGCTTGCATTTGAAACAATTCCAAATAAGATTGAAGCTCAGGCTTATGCAGAACTTCTGGAAGAAGAGAACATAAAGATTCCAGCATGGTTTTGTTTTAACTCTAAGGATGGAATTAATGTTGTTAGTGGTGATTCTCTGGTGGAATGTGGTTCCATTGCTGAGGCATGCAACAAAGTCGTTGCTGTTGGGATCAATTGTACCCCACCTAGATTTATACACGGTCTTATACTTCTGCTTAAGAAGGTGACTAGAAAACCAATTGCCATATATCCAAATAGTGGGGAAACTTATGATGGTGATCGAAAAGAGTGGGTGCAAAATACAGGTGTTACAAATGAAGATTTTGTCTCGTATGTTAGTAAATGGTGCGAGTTAGGGGCTTGCCTTATAGGTGGCTGTTGTAGAACGACTCCTGTTACCATTAGAGGGATATACAAGACACTATACAACAGTCAATCTGCTACTCTTGCTACAAAGTGA 1029 0.4198 MSSSSSLISDFLHQTGGTAIIDGGLATELERHGADLNDPLWSAKCLISTPQSNLIRQVHLDYLENGADIITTASYQATIQGFKEKGFSNEEGENMLRRSVEIACEARDLYYERCAASSSGDKTDGRILKKRTILIAASVGSYGAYLADGSEYSGVYGDAITLATLKDFHRRRVQVLADSGADLLAFETIPNKIEAQAYAELLEEENIKIPAWFCFNSKDGINVVSGDSLVECGSIAEACNKVVAVGINCTPPRFIHGLILLLKKVTRKPIAIYPNSGETYDGDRKEWVQNTGVTNEDFVSYVSKWCELGACLIGGCCRTTPVTIRGIYKTLYNSQSATLATK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03833 342 ProSiteProfiles Homocysteine-binding domain profile. 7 331 IPR003726 -
Trre13g03833 342 PIRSF BHMT 8 251 IPR017226 GO:0008168|GO:0008270|GO:0009086
Trre13g03833 342 PIRSF BHMT 280 339 IPR017226 GO:0008168|GO:0008270|GO:0009086
Trre13g03833 342 FunFam Homocysteine S-methyltransferase 8 330 - -
Trre13g03833 342 Gene3D - 8 329 IPR036589 -
Trre13g03833 342 PANTHER ZGC:172121 14 333 - -
Trre13g03833 342 Pfam Homocysteine S-methyltransferase 20 330 IPR003726 -
Trre13g03833 342 SUPERFAMILY Homocysteine S-methyltransferase 15 333 IPR036589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03833 Trre-Chr13 46435009 46440145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03833 K00547 - gmx:100790567 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03833 13 46435009 46440145 Trre13g03833 13 46435009 46440145 ECH