Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03824 ATGATTAGTAGCACATTCACTCCTTGTGCTAATATCATTACAGGAAGCACTAATAATGGTTTAGTACCATCAACTACATGTTGTGATTCATTAAGGTCTTTGATGAACACTAATATGGATTGTGCTTGCCTTATGATGTCTTCCAATTCTCCAATTTTACAACTATCTATTAACCAAGTTCTTGCAATATCTCTTTCACAAGCATGTAACATTAATGGTGCCTCTGTACAATGCAAAGGCCCAGCAGTTATTGGACCAAACAGCCCAACTCTCCCTTCAAGTGCTCCAACTCCCTTAAGCCCTCAAGAAAATACACACAGGTATAAGAATCTAGAATTGGCAGAGGCAGGAGCATCGACACCATCATCGTCAGCACCAACGGAAGCAGCAGCAGCACCCGCTATAACTTCAAGAATCATACCAGTTTTGACTCCTCTTCCTTCAGCATCTCCTCCATCTTATTATTCCTTGTCATCACCTTCTGCAATACTGTTATTTATACTCATAGGAATAGTATTGGATTTTGGCATCCATTAA 537 0.3985 MISSTFTPCANIITGSTNNGLVPSTTCCDSLRSLMNTNMDCACLMMSSNSPILQLSINQVLAISLSQACNINGASVQCKGPAVIGPNSPTLPSSAPTPLSPQENTHRYKNLELAEAGASTPSSSAPTEAAAAPAITSRIIPVLTPLPSASPPSYYSLSSPSAILLFILIGIVLDFGIH 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03824 178 Pfam Probable lipid transfer 5 78 IPR016140 -
Trre13g03824 178 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 4 76 IPR036312 -
Trre13g03824 178 Gene3D - 1 78 IPR036312 -
Trre13g03824 178 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 5 119 IPR043325 -
Trre13g03824 178 CDD AAI_LTSS 6 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03824 Trre-Chr13 46382068 46383618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03824 4 79 Lipid Metabolism Gene Families AT2G48140 48.684 2.95e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03824 - - gmx:100786841 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03824 13 46382068 46383618 Trre13g03824 13 46382068 46383618 ECH