Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03819 ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATAAGGTGCCTTGCACGTGTTCCTTTCTACCTCCACCCAAAGTTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCGTAGCCCAGAACTATCAAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCTTGTGTGTCTGTGCTTTTGATCCAGAGAACGTATGGCAACTGTATGATCCTCTAAGAGATCTTTGGATTACCCTTCCTGTTCTTCCCTCAAAGATCAGACACCTTTCTCACTTTGGTGCCGTATCCACAGCTGGAAAGTTGTATGTCATTGGCGGTGGAAGCGATGCTGTTGATCCTTCAACCGGTGATCATGATGGATGTTTTGCAACTGATGAGGTTTGGTCATATGACCCGATAATCAAGCAGTGGTCCCCTCGGGCATCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGCTTCACTAGTTGTAGAAAAACAATATCTCAAGCTGAAATTTACGACCCTGAGAAGGATTTATGGACTCCAATGCCCGATCTTCATCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGACATGTCGACGGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTTGAGGAGTGTGATTGGCTTCAAGGTCCAATGGCAGTAGTCCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATGAAGCAGGACAAAGAAGGGAGAAAGATTGTATATTCAGCAACAGATTTTAAGAAGAGAATTGGGTTTGCAATGATTGGACTTGGCGATAATTTATATATGATTGGAGGCGTCATTGGACCTGACAGATGGAACTGGGACATTAAACCATTATCAGATGTTGATGTTCTCACACTTGGGAGTGAGAGACCAACTTGGCGCCAAGTAGCTCCAATGACAAGATGTCGTGGTACCATCGTTGGTTGTACACTGCTGAGAATTTAA 1038 0.447 MSGLIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIRSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKIRHLSHFGAVSTAGKLYVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIKQWSPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEIYDPEKDLWTPMPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECDWLQGPMAVVQDALCVMSNGSIMKQDKEGRKIVYSATDFKKRIGFAMIGLGDNLYMIGGVIGPDRWNWDIKPLSDVDVLTLGSERPTWRQVAPMTRCRGTIVGCTLLRI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03819 345 CDD F-box_AtAFR-like 4 48 - -
Trre13g03819 345 PANTHER OS02G0202900 PROTEIN 3 343 IPR045887 -
Trre13g03819 345 Gene3D - 61 343 IPR015915 GO:0005515
Trre13g03819 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Trre13g03819 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Trre13g03819 345 SMART kelc_smart 289 344 IPR006652 GO:0005515
Trre13g03819 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Trre13g03819 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Trre13g03819 345 SUPERFAMILY Kelch motif 61 334 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03819 Trre-Chr13 46356119 46357156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03819 8 188 Miscellaneous Gene Families AT4G33900 28.421 1.86e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03819 - - cam:101512165 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03819 13 46356119 46357156 Trre13g03819 13 46356119 46357156 ECH