Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03818 ATGGAAGAAGAACTTGCAACAGAAACCAGAAAAGAAACCGAAGTAGCACCAGCCCTAATCGCCGTCAACCCAAACGGCCACCACATCGCCGTCGCAGTTGGACTGGAGCTCCGCATCTTCAACCTCCATAACAATTCTGCAGTTTCTTTGCACGACGATTCCATCTCCGGTGATCAACATTTCCATAAAGATAACATCAGAGCAATTCGATTTGGCGCTAAAGGAAAACTGTTCGTATCTGCCGGTGATGATAAAACCCTAAAAATTTGGTCAGTGAAATCTTGGCATTGCATTTCAACTGTTTTGGCGGAGAAGAGAGTTACTGCGGTTGCTATAAGCAACGACGGTTTGCACGTTTGTTTTGCTGATAAATTTGGACTTGTTTGGGTTGTGGATCTTAATCAAACTTCAATTGATAAGAAACCGACGCCGCTTCTTTCGCATTATTGTAGTATCATCACTAGTTTGGAATTTTCACCTGATAATCGGTTTATTATTAGTGCTGATAGGGATTTTAAAATTCGTGTTACTAATTTTCCCAAGAATCCTTTAAATGGAGCTCACGAGATACAGAGTTTTTGTCTTGGTCATACAGAGTTTGTTTCCTGCCTTGCTTTCGTTCCTGCTTTGGAAAGTCCTCACAGTCGTCTACTATCTGGAAGTGGTGATTCCACAGTCCGATTGTGGGATATCTCCTCTGGAGCACTCCTAGATACTTGTGAGGTTGCAGTTAAGGCAGGGCTTTTAGAGTCCAATGGCAATGCAGAGGAGCATGGCCATGCTGTTACTGATTTATGTACCACCTTGGATGGTTTGCTTGTTGCCGTGGCCATTCAGAGCTTGCGAGGAATTGTATTGTTGAGCTACAATGTTTCTGCACAAACACTTTCTGTAGCCAAGGTTGTTTCTATTGCAGGAGACACCTTTGTCCCTACTTGCCTGGCGAACAGCCCGCCTACTAGGGAATTGTGGATGGTTACAGGTGTCTCCAGTTTACCTGGTTATGATTACCCCTCTTTGGCTCGTGTCCTAGTAATTTCTGGTATTGATGCTGAGCAAGAGCCAGTTGTTCTGGTAGACGATAAGATACCTGGGGGAGTAAAGCTGCTAGAAACGTTACAAGGAGCTGCAACTGTTGACGACAATGCTTTTTCGGTAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCAATACACTTTCGAGAATAGAGAATATAGAAAGAAAACCAGAAATGATAAAAAACACAAGGAATAG 1272 0.4316 MEEELATETRKETEVAPALIAVNPNGHHIAVAVGLELRIFNLHNNSAVSLHDDSISGDQHFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSVKSWHCISTVLAEKRVTAVAISNDGLHVCFADKFGLVWVVDLNQTSIDKKPTPLLSHYCSIITSLEFSPDNRFIISADRDFKIRVTNFPKNPLNGAHEIQSFCLGHTEFVSCLAFVPALESPHSRLLSGSGDSTVRLWDISSGALLDTCEVAVKAGLLESNGNAEEHGHAVTDLCTTLDGLLVAVAIQSLRGIVLLSYNVSAQTLSVAKVVSIAGDTFVPTCLANSPPTRELWMVTGVSSLPGYDYPSLARVLVISGIDAEQEPVVLVDDKIPGGVKLLETLQGAATVDDNAFSVAAEAVKAAMCNLLIKKQYTFENREYRKKTRNDKKHKE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03818 423 SMART WD40_4 94 132 IPR001680 GO:0005515
Trre13g03818 423 SMART WD40_4 52 91 IPR001680 GO:0005515
Trre13g03818 423 SMART WD40_4 186 230 IPR001680 GO:0005515
Trre13g03818 423 SMART WD40_4 139 178 IPR001680 GO:0005515
Trre13g03818 423 PANTHER WD40 REPEAT PROTEIN 4 16 417 IPR028884 GO:0036265
Trre13g03818 423 Gene3D - 104 361 IPR015943 GO:0005515
Trre13g03818 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Trre13g03818 423 Gene3D - 16 103 IPR015943 GO:0005515
Trre13g03818 423 SUPERFAMILY WD40 repeat-like 19 348 IPR036322 GO:0005515
Trre13g03818 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 239 IPR001680 GO:0005515
Trre13g03818 423 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 105 357 - -
Trre13g03818 423 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Trre13g03818 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 26 415 IPR028884 GO:0036265
Trre13g03818 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 234 - -
Trre13g03818 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Trre13g03818 423 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Trre13g03818 423 Pfam WD domain, G-beta repeat 61 91 IPR001680 GO:0005515
Trre13g03818 423 Pfam WD domain, G-beta repeat 147 176 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03818 Trre-Chr13 46330663 46333516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03818 62 237 Miscellaneous Gene Families AT5G08390 25.424 1.14e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03818 K15443 - gmx:100809122 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03818 13 46330663 46333516 Trre13g03818 13 46330663 46333516 ECH