Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03800 ATGGATACGGTTGAAGAAGAACTTGTTGAGATTCCAATTCCATCTTCTTCTTCATCAATGGCGAAGAGACCTTGTCCATCTCAAAACCCTAGAATGGAACTCGAACATCTCCTCTTCGAATTCCTCTCCCTCTCCGATCGTCCTTCTCTCTCCCTCGATCTCTCCTTCGAGAATCTTCTTCAATCAATGCCTCCTGATTCCGATCTCATCGATCGCGCTCTTAAAATGGGATCTCTTCTTCTCGATGCTGCTAAACATTCCTCCCGTAAACGCGCTTCTAATCATAATTCAATTGTTTGGCCTCTCCCTCCTGATCTCACTTTCAAGATCTTCTCGATGCTTGATACTCAGAGTCTGTGCTATGTATCTGCTGCTTGTTCATTTTTTAGCAAATGTGCTAAAGATCCTTTGTGTTATGAGAATCTTGATTTGACAACACTTGTTCCCAAGGTTAATAATGCAGTAGTTGCTACTATGATTCAGCGAGCTGGAAAGGCACTAAGGTCTCTTAAACTTGGTGTTGTCCCTGCTACTGCTTGTTCTCCTCCTCCTGGATTTTGTCAGCCAATGGTTTCTACCATCAGAAAGGCTATTGTAGAGGCGCCCAACTTTTCATGGAATGATAAGAGATCTCGCCAAGGGAGAGAGTCATCCGTTCTTACAAGATGCTGTTTAAGCCCTTTAAGTGGGGATGGTGGTGCACCAGGGGCTCTTTTGAGAAAGTTACACCTGTACAATATTGAGAGAATGGACAGCGCATCCCTTTGTTGTGCATTGTCAGCATGCCCATCTCTCCTTGATCTGGAAATTGTCGGAATCCATGTTGAACTGAGGCAAACATTAATGTCAGTAAGTGCAAACTGCCACCTGATTGAGCGTTTGTTTTTTGAGTCTTCAAGAACAGGTAGAGATGACAGCTTGAAAGCGCAAACCTGTTCTGAGCTAGTAAACAATTGTCCTCATCTTACTTCTTTATCTCTTCGAGGGTTTAAGCTACATGATTGTAAAGTTCGTATACTGGTTAAGGGATTTCGGAAGCTGAAATATGTTGATTTTTCATCATCATATTCAATCACAGGAAATTTCTTAAGGAACCTTGGAAACTGCAATGGTGGGAACTTGCTTGAGGTCCTAATTCTAAGGGATTGCATGCATCTCAAAGAGATGGAAGTTATTAGGTTTTTGACAGCAATTCTTGCAGGAGATTTCAAATTGCTTATGCATCTTGACATATCCAATAGGGAAGGCCTAGCATGTGATGCTGACTGGTATCACAGGTGCTACAACTCTAGTAATATGCCTATTAAGCAAGTTTTGGAAGCAAGGCCTGATATGCGATTGGTTGCTGAATATCCATCCGAAGGAAGCTACGCCGAGACATGTGATACTGATATGAATAGTGATATAAGTCTTCAATTCAGCAGCCCCACATCAGATGGATCAATTTTTATGAGTACATCTGAAAGCAGCTACAACAGTGATCACGGTAGTGGCAATGAGGAAGGACAAGATGCGGTGATTTATGGGGAAAGTTCAGATGAGGACAACAACATGAACCTGTAA 1563 0.4229 MDTVEEELVEIPIPSSSSSMAKRPCPSQNPRMELEHLLFEFLSLSDRPSLSLDLSFENLLQSMPPDSDLIDRALKMGSLLLDAAKHSSRKRASNHNSIVWPLPPDLTFKIFSMLDTQSLCYVSAACSFFSKCAKDPLCYENLDLTTLVPKVNNAVVATMIQRAGKALRSLKLGVVPATACSPPPGFCQPMVSTIRKAIVEAPNFSWNDKRSRQGRESSVLTRCCLSPLSGDGGAPGALLRKLHLYNIERMDSASLCCALSACPSLLDLEIVGIHVELRQTLMSVSANCHLIERLFFESSRTGRDDSLKAQTCSELVNNCPHLTSLSLRGFKLHDCKVRILVKGFRKLKYVDFSSSYSITGNFLRNLGNCNGGNLLEVLILRDCMHLKEMEVIRFLTAILAGDFKLLMHLDISNREGLACDADWYHRCYNSSNMPIKQVLEARPDMRLVAEYPSEGSYAETCDTDMNSDISLQFSSPTSDGSIFMSTSESSYNSDHGSGNEEGQDAVIYGESSDEDNNMNL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03800 520 FunFam F-box protein isoform A 95 398 - -
Trre13g03800 520 MobiDBLite consensus disorder prediction 484 520 - -
Trre13g03800 520 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 101 419 - -
Trre13g03800 520 MobiDBLite consensus disorder prediction 484 499 - -
Trre13g03800 520 SUPERFAMILY RNI-like 233 417 - -
Trre13g03800 520 MobiDBLite consensus disorder prediction 1 27 - -
Trre13g03800 520 Pfam F-box-like 102 144 IPR001810 GO:0005515
Trre13g03800 520 Gene3D Ribonuclease Inhibitor 97 399 IPR032675 -
Trre13g03800 520 SUPERFAMILY F-box domain 101 148 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03800 Trre-Chr13 46123377 46128548 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03800 K10268 - gmx:100786317 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03800 13 46123377 46128548 Trre13g03800 13 46123377 46128548 ECH