Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03790 ATGATGATGAGTGTTCAATTTCAACTATCATCATGCTTATGGCTTCCAAACTCTCCATCTCCATCAATTTCTCCACTATTTCTTCCCACTCGTACTACCAGATTCTCATCTTCACCTCTCGCTGCTACACCAACCTTCTCTTCTCAATCTCCCACCATTCAGATAATTGGCAACAATACATTTGATGGTAACCAAGTCGAGACTAATCTTTGGACTGATCTTGACACTGATCTTTATCACTGGACAAAGGTTTTACGCCCCGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAGGAATTGAAGGAGCAACTCAAGTTGATGGATGTTGTTATAGAGGTGCGAGATGGACGAATTCCGTTGTCTACAAGTCATCCGCAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCAACTGCGGATCGAAATGCTTGGGCAGAATATTTTACTAGGCGTGGAACAAAGGTTGTCTTCTCCAATGGACAGCTTGGAATGGGCACAATGAAGCTAGGCCGGTTAGCAAAGGAGTTAGCAGCTGATGTAAATGTTAAACGGAGAGCCAAAGGACTACTTCCTCGTGCGATTCGAGCTGGAATTGTTGGATACCCTAACGTTGGAAAATCATCTTTGATCAACCGTTTGATAAAGCGAAGAATGTGCCCAGCAGCTCCAAGGCCAGGAGTTACAAGAGATTTGAAGTGGGTTCGATTTGGGAAAGATCTTGAATTGCTGGATTCTCCTGGGATACTTCCTATGCGAATCAGTGACCAGTCAGCAGCTATAAAACTTGCAATATGTGATGACATTGGGGAGAGGTCCTATGATATAGCTGATATTGCTGGAATTCTTGTGCAGATGCTTACAAAGTTTCCAACAGTAGGTCGAGACGTGCTTTGTAAACGATACAAGATTCACGAAGACAGTGAATGTGGTAAAATATTCATAGAGAAGCTGGCCATTCACTTGTTCAATGGAGATGTTCATCAAGCAGCATACCGTGTCCTGTCCGATTTTAGAAAAGGTAGGTTTGGTTGGACTGCATTGGAGAGGCCTCCTAGGTGA 1095 0.4283 MMMSVQFQLSSCLWLPNSPSPSISPLFLPTRTTRFSSSPLAATPTFSSQSPTIQIIGNNTFDGNQVETNLWTDLDTDLYHWTKVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWAEYFTRRGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRAKGLLPRAIRAGIVGYPNVGKSSLINRLIKRRMCPAAPRPGVTRDLKWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDIADIAGILVQMLTKFPTVGRDVLCKRYKIHEDSECGKIFIEKLAIHLFNGDVHQAAYRVLSDFRKGRFGWTALERPPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03790 364 FunFam Mitochondrial GTPase 1 266 354 - -
Trre13g03790 364 FunFam DAR GTPase 3 chloroplastic 88 261 - -
Trre13g03790 364 Pfam 50S ribosome-binding GTPase 208 265 IPR006073 GO:0005525
Trre13g03790 364 Gene3D - 88 261 IPR027417 -
Trre13g03790 364 CDD YlqF 90 261 - -
Trre13g03790 364 PRINTS GTP1/OBG GTP-binding protein family signature 208 228 IPR006073 GO:0005525
Trre13g03790 364 PRINTS GTP1/OBG GTP-binding protein family signature 254 269 IPR006073 GO:0005525
Trre13g03790 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 274 IPR027417 -
Trre13g03790 364 NCBIfam ribosome biogenesis GTPase YlqF 88 360 IPR019991 -
Trre13g03790 364 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 77 363 - -
Trre13g03790 364 Gene3D - 266 354 IPR023179 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03790 Trre-Chr13 46039768 46042649 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03790 K19828 - gmx:100784201 574.704