Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03781 ATGGAAGCAACGCGATTCTCCTTCTACCATTTCCATCCTCACAACTTCCGACCCAAACCCAACGCATTTCCAGGAAGAAGACACACACAAACAATCCAAACAATTAGAACTAGGGTTTCACTTTTCACAACAAATTCACCTTCTCTTAACCGTAGAATTTCCGTTAACTTCTCCGACCGGCTCCGAAGTGATTACATGCGCGTCGAGACACCGCATTTGAGTGAAGAAGTTGTTCCGGAAACTAGTGGTCATGACGGTGAAGCAATTGTTGCTTCTTCCGACGGTGATGACTTGAGAACTTTGGAGCTTAAACCTAAAACGTTCAAAAATAGGTTTCTGAATTTTGTGCGTTTTGGTTCTGTTATTAATGGTGCTGCTGAAACGTTTTTTAAGAGTGAGATTAGGAGGAGATTGTTTGTTACTGCTGTTTTAATTGTGATTAGTCGTGTTGGTTATTTTATTCCTCTTCCTGGATTTGATAGAAGGTTGATACCTAAAGATTATATGAGCTTTGTCTCTGGTTCATCCGTTGATGAACTTGGTGACTTCTCCTCTGAGCTGAAGCTGTCTCTTTTCCAGCTTGGAATCAGTCCTCAGATAATAGCATCCATTATTATGCAGGTATTGTGTCATGTTATTCCTTCTCTAGTAAAGTTGCGGAAAGAAGGTTTGGATGGGCATGAGAAGATTAAGAGTTATATTTGGTGGATGTCACTGGGCTTTGCAATTATGGAAGCTCTAATAGTTTCTTTCTACTCACTTCCATACTCAATCTACGCTGCTAGTTATAGGTTCAAACATGTAATGGTGACAACTTTGTTACTGGTTTGTGGTGCAATGACTATTACATGGATATGTGATACCATATCAGAATCTGGATTTGGTCAAGGTTCATCTCTTATCATATGTGTTGGAATACTGACGGGGTATATGGAGACATTACACAAAATGCTTACTCAGCTTTCAGTGAGTGCTGTTAGTTGGTGGCCATATGTGCTTGCAGTGTTGGGTCTCTTCACCATAGTCACTATGTGGGCAGTTATAGTAACTGAAGGTTGCAGGAAAGTAAAGCTTCAGTACTATGGTTTCAAACTTGCTTCTGCCGCAAGGGAGCAATCGCCTATTACTGAAGTGGAGCCCTATATTCCTTTCAATATAAATCCAGCAGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCATTTCCAAGCATTGTCGCTGGTTTGCTTGGGTCACCTTTTTGGGGGAATGTGAAGGAAATATTGAATCCTGAAACTTCTGTTGGTGCTGAACCGTGGGTCTACTATTCAATATATGCCTTCTTTGTCTTCCTTTTCAATATATTTGATATTGCTAACTTGCCAAAGGAAATTGCTGATTACTTGAATAAGATGGGTGCAAGAATACCAAATGTTAAGCCTGGGAAGGCTACAATAGAATACCTCTCAAAGGTTCAGGCATCCACACGATTTTGGGGGGGGTTATTGTTAAGTGTTTTGGCCACTACTTCAAGTGTTCTTGATCACTATTTACGGCGTACCAATGCTGGATTTGCTATTGGTTTTACATCAGTTCTAATTATTGTTGGCTCCATTATTGAACTAAGAAGATCGTATCAAGCATATAATGTGATGCCAAGCTTAAGCAGTGCTTTGAGACGTTATGGTGTATAA 1677 0.4043 MEATRFSFYHFHPHNFRPKPNAFPGRRHTQTIQTIRTRVSLFTTNSPSLNRRISVNFSDRLRSDYMRVETPHLSEEVVPETSGHDGEAIVASSDGDDLRTLELKPKTFKNRFLNFVRFGSVINGAAETFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPKDYMSFVSGSSVDELGDFSSELKLSLFQLGISPQIIASIIMQVLCHVIPSLVKLRKEGLDGHEKIKSYIWWMSLGFAIMEALIVSFYSLPYSIYAASYRFKHVMVTTLLLVCGAMTITWICDTISESGFGQGSSLIICVGILTGYMETLHKMLTQLSVSAVSWWPYVLAVLGLFTIVTMWAVIVTEGCRKVKLQYYGFKLASAAREQSPITEVEPYIPFNINPAGMQPVLTTSYLLAFPSIVAGLLGSPFWGNVKEILNPETSVGAEPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYLRRTNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSSALRRYGV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03781 558 FunFam Preprotein translocase subunit SCY2, chloroplastic 122 548 - -
Trre13g03781 558 Pfam SecY 190 536 IPR002208 GO:0015031|GO:0016020
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 389 408 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 291 314 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 189 209 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 265 290 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 434 456 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 230 253 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 138 156 - -
Trre13g03781 558 PRINTS Preprotein translocase SecY subunit signature 522 540 - -
Trre13g03781 558 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 128 546 IPR002208 GO:0015031|GO:0016020
Trre13g03781 558 Gene3D SecY subunit domain 122 548 IPR023201 -
Trre13g03781 558 SUPERFAMILY Preprotein translocase SecY subunit 118 543 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03781 Trre-Chr13 45963131 45969311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03781 1 558 Miscellaneous Gene Families AT2G31530 69.692 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03781 - - gmx:100803256 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03781 13 45963131 45969311 Trre13g03781 13 45963131 45969311 ECH